Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_04685 and RBAM_028900

See Amino acid alignment / Visit BSNT_04685 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:09
# Commandline: needle
#    -asequence dna-align/BSNT_04685___yueD.1.9828.seq
#    -bsequence dna-align/RBAM_028900___yueD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04685___yueD-RBAM_028900___yueD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04685___yueD-RBAM_028900___yueD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04685___yueD
# 2: RBAM_028900___yueD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 787
# Identity:     519/787 (65.9%)
# Similarity:   519/787 (65.9%)
# Gaps:         110/787 (14.0%)
# Score: 1623.0
# 
#
#=======================================

BSNT_04685___      1 ATGGAACTTTATATCATCACCGGAGCGTCAAAAGGGC-TGGGTCAAGCCA     49
                     |||.|..|||.|.|.||.||.||.||||| ||||||| ||||.|..||..
RBAM_028900__      1 ATGCAGTTTTTTCTTATAACAGGCGCGTC-AAAGGGCTTGGGCCGGGCGC     49

BSNT_04685___     50 TTGCATTACAG--GCTTTAGAAAAGGGGCATGAAGTCCATGC-CTTATCC     96
                     ||.|...||||  ||||.| |.||||.|| .||||||...|| ||| ||.
RBAM_028900__     50 TTACGGAACAGGCGCTTCA-AGAAGGAGC-CGAAGTCGCCGCGCTT-TCA     96

BSNT_04685___     97 AGAACGAAAACAGATGTCTCTCACAAAAAAC-TAACG------CAGCATC    139
                     |||||||.||..|..|         ||||.| |.|.|      |||    
RBAM_028900__     97 AGAACGATAAGCGGGG---------AAAAGCGTGAGGGGCTGACAG----    133

BSNT_04685___    140 AAATA-------GACCTCATCAATCTCGAAGA-----------AGCTGAA    171
                      ||||       ||..|.|.|.||||.|.|||           ||.||||
RBAM_028900__    134 -AATACAGTGTTGATTTAACCGATCTGGCAGATACCGGCCGGCAGATGAA    182

BSNT_04685___    172 CAGCAATTTGAAACATTGCTCTCATCCATCGATTCAG------ATCGTTA    215
                      .||.|||      .|||.||          |..|||      |..|.||
RBAM_028900__    183 -GGCGATT------CTTGATC----------AAGCAGAGGAGAAGGGATA    215

BSNT_04685___    216 TTCTGGTATTACCCTTATTAATAACGCCGGAATGGT--AACGCCGATCAA    263
                     .||.|...|.||.||.||.||.||.|||||||||||  ||  ||||||||
RBAM_028900__    216 CTCCGCCGTCACACTGATCAACAATGCCGGAATGGTGGAA--CCGATCAA    263

BSNT_04685___    264 ACGTGCCGGCGAA----GCGTCTCTTGACGAGCTTCAGCGCCATTATCA-    308
                         ||.||||||    ||.||....||.||..|..|.|||||||| || 
RBAM_028900__    264 ----GCGGGCGAAAGAGGCTTCCGCCGAAGAATTGAACCGCCATTA-CAC    308

BSNT_04685___    309 GCTGAACCTGACTGCGCCCGTGCTTTTGAGTCAGC----TGTTTACAAAA    354
                     .||.||.|||||.|||||||   ||||| .|||||    ||||.|||||.
RBAM_028900__    309 CCTTAATCTGACGGCGCCCG---TTTTG-CTCAGCCAAATGTTCACAAAG    354

BSNT_04685___    355 CGGTTTGCTTCATACAGCGGCAAAAAGACGGTTGTCAACATTACTTCAGG    404
                     |..||.|...|.|.||||||||..||.||..||||||||||.||.||.||
RBAM_028900__    355 CATTTCGAAGCGTTCAGCGGCAGCAAAACAATTGTCAACATCACATCGGG    404

BSNT_04685___    405 AGCCGCCAAAAATCCATATAAGGGATGGAGCGCGTATTGCAGTTCAAAAG    454
                     .||.||.||||||||.|||||.||.|||||||||||||||||.|||||||
RBAM_028900__    405 CGCGGCGAAAAATCCTTATAAAGGCTGGAGCGCGTATTGCAGCTCAAAAG    454

BSNT_04685___    455 CCGGGCTCGACATGTTTACGAGGACATTCGGATTTGAACAGGAGGATGAA    504
                     |.|||||.||.|||||||||||.||||||||.|||||||||||.||||||
RBAM_028900__    455 CGGGGCTTGATATGTTTACGAGAACATTCGGGTTTGAACAGGAAGATGAA    504

BSNT_04685___    505 GAGCTGCCGGTGAACATGATTTCGTTCTCACCTGGAGTGATGGACACTGA    554
                     |||||||||||...||||||.||.|||||.||.|||||||||||.||.||
RBAM_028900__    505 GAGCTGCCGGTCCGCATGATCTCATTCTCGCCGGGAGTGATGGATACAGA    554

BSNT_04685___    555 GATGCAGGCCGTCATCCGTTCTTCATCGAAAAAGGATTTCCACCACATTG    604
                     .||||||||.||||||||||||||.||.|||.|.||||||||..||||.|
RBAM_028900__    555 CATGCAGGCTGTCATCCGTTCTTCGTCAAAAGAAGATTTCCATGACATCG    604

BSNT_04685___    605 AACGATTCCGGAAATTAAATGAAACAGGAAGCCTTCGCAGTCCGGACTTT    654
                     ||||.|||||.||..|.||.|||||...||.|||..|.|||||.||.|..
RBAM_028900__    605 AACGGTTCCGCAATCTGAAAGAAACGAAAAACCTCAGAAGTCCTGAATAC    654

BSNT_04685___    655 ATTGCCGGCACGCTGCTTTCTTT-----ACTAGAAAAAGG----GACGGA    695
                     ||.||||||        .||.||     ||| ||....||    |.||||
RBAM_028900__    655 ATCGCCGGC--------GTCATTCACTCACT-GATCGCGGGCGAGCCGGA    695

BSNT_04685___    696 AAACGGCCGCATTTATGATATTAAAGAGTTTTTGTAG    732
                     ||||||.||.||.||.|||||||||||.|||||||||
RBAM_028900__    696 AAACGGACGGATATACGATATTAAAGAATTTTTGTAG    732


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04685 and RBAM_028900

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
