Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04678 and RBAM_028880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:09
# Commandline: needle
# -asequence dna-align/BSNT_04678___yueF.1.9828.seq
# -bsequence dna-align/RBAM_028880___yueF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04678___yueF-RBAM_028880___yueF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04678___yueF-RBAM_028880___yueF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04678___yueF
# 2: RBAM_028880___yueF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1366
# Identity: 854/1366 (62.5%)
# Similarity: 854/1366 (62.5%)
# Gaps: 269/1366 (19.7%)
# Score: 3163.0
#
#
#=======================================
BSNT_04678___ 0 -------------------------------------------------- 0
RBAM_028880__ 1 TTGATGCCACTCCGGATCACATCGCCATTGAAGAAACGCATGACCGTGTA 50
BSNT_04678___ 0 -------------------------------------------------- 0
RBAM_028880__ 51 TTTTATATCAGAAACCGCCATGTGGTTTCCGTCATGCCTGATTATACCGA 100
BSNT_04678___ 0 -------------------------------------------------- 0
RBAM_028880__ 101 ACGCGTGTAACAGCCCGAATAAGGCGCAAACCGGAGGCGGCCCTATAGAA 150
BSNT_04678___ 0 -------------------------------------------------- 0
RBAM_028880__ 151 CCCCGGTGCGTCTTCTTTTTTGAGATACATAGATGCACGGCGGCTTTTTT 200
BSNT_04678___ 1 ----------------------------------------------TTGT 4
||||
RBAM_028880__ 201 TGGTACAATCACAGTACAAGTTCACATGACAATAGGAGGAAACCGCTTGT 250
BSNT_04678___ 5 TGAAATCAAAAGTCCATTTTTGGACATTGCAGATTTTATTTGTTTTGCTG 54
||||||||||.||||||||||||||..||||.|||||..|.||||||||.
RBAM_028880__ 251 TGAAATCAAAGGTCCATTTTTGGACGCTGCAAATTTTGCTCGTTTTGCTC 300
BSNT_04678___ 55 ATTATTTTTGTAGCAACAAAAGTTTCATTTGTATTTCAGCCGTTTATTGT 104
|||||||..|||.||||.|||||.||.|||.|.||||||||||||.|.|.
RBAM_028880__ 301 ATTATTTACGTATCAACGAAAGTCTCGTTTATTTTTCAGCCGTTTTTCGG 350
BSNT_04678___ 105 TTTTATCTCGACATTGTTTTTCCCGATGCTGATTGCGGGAATTTTGTATT 154
|||||||.|.||..|||||||.|||||..||||..||||.|||||||.||
RBAM_028880__ 351 TTTTATCACCACTCTGTTTTTTCCGATTTTGATCTCGGGCATTTTGTTTT 400
BSNT_04678___ 155 TCATATTTAATCCGGTCGTCCGCCTGCTTGAAAAAAAAATTCCGCGGACA 204
||||.|||||||||.||||.|||||||||||.||||||||.||.||||||
RBAM_028880__ 401 TCATTTTTAATCCGATCGTACGCCTGCTTGAGAAAAAAATCCCCCGGACA 450
BSNT_04678___ 205 TT----ATCCATTCT-ATTGATCTATTTACTGTTTATCGGTTTGCTTGCC 249
|| |||| |.|| |||.||||..|| ||.|||||..||.|||||
RBAM_028880__ 451 TTGGCGATCC-TGCTCATTTATCTCGTT----TTCATCGGCCTGATTGCC 495
BSNT_04678___ 250 TTTAT-TTCAGCGTCAGTCGGACCTATCATCACCTCACAGGTGACAGGGC 298
||||| ||||.|| |..|||||||.||..|..|.||.|||||.||.||||
RBAM_028880__ 496 TTTATGTTCACCG-CGATCGGACCGATTGTGGCTTCCCAGGTCACGGGGC 544
BSNT_04678___ 299 TGTTTAACAACCTTCCTGATTATATAAAACAGATTCAGGCGCTGACAAAG 348
||.|||||||..|.||||||||.||..|.||||||||.|...||||...|
RBAM_028880__ 545 TGATTAACAATTTCCCTGATTACATTCATCAGATTCAAGTCTTGACGGCG 594
BSNT_04678___ 349 GATTTGTCCCATTCTCAATGGTTTACCTGGATGATGAACCAGGATTATGT 398
.|.||.||||||||..||||||||||.||||||||||..|||||||||||
RBAM_028880__ 595 CAATTATCCCATTCCAAATGGTTTACGTGGATGATGACGCAGGATTATGT 644
BSNT_04678___ 399 ATCGATATCAAAAATTGAACAGTCATTGACAAGTTTTCTCCAAAACTTGC 448
.||||||..||||||..|.|||||..||||..|.|||.|.||||.|.|.|
RBAM_028880__ 645 GTCGATAGAAAAAATCCAGCAGTCTCTGACGGGATTTTTACAAAGCCTTC 694
BSNT_04678___ 449 CGCAAAATATCACGTCCAGTTTATCTGCGGTGTTTGGTGTCGTGACAAAC 498
||||||||||.|||.|.||..|.||.||.|||||.||.|||||.||.||.
RBAM_028880__ 695 CGCAAAATATTACGGCAAGCCTGTCGGCCGTGTTCGGCGTCGTTACGAAT 744
BSNT_04678___ 499 ATCACGCTTGTTATTATTACTGTTCCATTTATCCTTTTTTACATGTTGAA 548
|||||||||||..|.||.||.|||||.||.||..|.|||||.|||.||||
RBAM_028880__ 745 ATCACGCTTGTCGTGATCACCGTTCCGTTCATTTTGTTTTATATGCTGAA 794
BSNT_04678___ 549 AGACGGACACCGCTTTCCGCATTTGGCAGTAAAAATTCTACCGGCTTCTT 598
.|||||.|..||.|||||||..|||||.||.|||||.||.||..||||.|
RBAM_028880__ 795 GGACGGCCGGCGGTTTCCGCTCTTGGCGGTTAAAATCCTGCCTACTTCCT 844
BSNT_04678___ 599 ATCGGACAGAAGG-CTTAAAGATTTTTAAAGATTTATCCGATACGCTTGC 647
|.|||.|.||||| |..||| ||.|||||.||.||||..|..||..|.||
RBAM_028880__ 845 ACCGGGCGGAAGGTCGGAAA-ATATTTAATGACTTATATGTCACATTGGC 893
BSNT_04678___ 648 GGCATATTTCCAGGGGCAGCTGTTAATCTGTCTTTTTGTCGGAACAGCGT 697
.||.||||||||.||.||||||||.||.|||||.|||||||||||.||.|
RBAM_028880__ 894 CGCCTATTTCCAAGGCCAGCTGTTGATTTGTCTCTTTGTCGGAACGGCAT 943
BSNT_04678___ 698 GTTTTATCGGCTATTTAATTGCCGGACTGCCGTATGCCCTGATTCTTGGG 747
|.||||||||.||||..||...|||.||||.||||||..|.|||||.|||
RBAM_028880__ 944 GCTTTATCGGATATTCGATCATCGGCCTGCAGTATGCGTTAATTCTCGGG 993
BSNT_04678___ 748 ATTGTCATGGCGATTACCAATATCATTCCCTATGTCGGGCCTTTTCTCGG 797
||.||.||.||..|.||||||||.|||||.||..|.|||||.||||||||
RBAM_028880__ 994 ATGGTGATCGCCGTCACCAATATTATTCCGTACCTGGGGCCGTTTCTCGG 1043
BSNT_04678___ 798 TGCCGCGCCGGCTGTCATTGTCGGTTTTATGGACTCGCCGGCCAAAGCGC 847
.||.|||||.||.||.|||.|||..||||||||.||||||||.||.||||
RBAM_028880__ 1044 GGCGGCGCCCGCGGTGATTATCGCGTTTATGGATTCGCCGGCTAAGGCGC 1093
BSNT_04678___ 848 TGTTTGCGATTATTGTGGTCGTCATCGTTCAGCAGCTGGACGGAAACCTG 897
|||||||..|||||||.|||||..||||.||||||||.|||||.||||||
RBAM_028880__ 1094 TGTTTGCCGTTATTGTTGTCGTTGTCGTCCAGCAGCTTGACGGGAACCTG 1143
BSNT_04678___ 898 CTGTCTCCTCTTGTGATCGGGAAGCGGCTGAATACCCATCCGCTTACGAT 947
||.|||||.|||||.||||||||.|||||.||||||||.|||||.||.||
RBAM_028880__ 1144 CTTTCTCCGCTTGTCATCGGGAAACGGCTCAATACCCACCCGCTCACCAT 1193
BSNT_04678___ 948 TATTTTGCTGTTAATCGGAGCGGGAAGCTTCGGCGGAATTCTCGGCATGA 997
||||.|.|||.|.|||||||||||.||.||||||||.|||||||..||||
RBAM_028880__ 1194 TATTCTTCTGCTTATCGGAGCGGGCAGTTTCGGCGGCATTCTCGCAATGA 1243
BSNT_04678___ 998 TTTTAGCGGTGCCGGTTTATGCGGTAGTGAAGGCGTTCTTCCTGAATATT 1047
||.|.||.|||||||||||.|||||..|.||.||.||..||.|.|||||.
RBAM_028880__ 1244 TTCTGGCCGTGCCGGTTTACGCGGTTTTAAAAGCTTTTGTCTTAAATATC 1293
BSNT_04678___ 1048 GTCC-GCTTGATCAAGCTTCGCCAGCGGTCACGACTCGAAGA-AAACGCA 1095
|||| |||| |||||.|||||.|||||||||...||.||||| |..||||
RBAM_028880__ 1294 GTCCGGCTT-ATCAAACTTCGTCAGCGGTCAAAGCTAGAAGACAGCCGCA 1342
BSNT_04678___ 1096 AAGCCAGCTG-AATAG 1110
|||.| ||||.
RBAM_028880__ 1343 -----AGCCGAAATAA 1353
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