Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04673 and RBAM_028850

See Amino acid alignment / Visit BSNT_04673 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:09
# Commandline: needle
#    -asequence dna-align/BSNT_04673___yueI.1.9828.seq
#    -bsequence dna-align/RBAM_028850___yueI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04673___yueI-RBAM_028850___yueI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04673___yueI-RBAM_028850___yueI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04673___yueI
# 2: RBAM_028850___yueI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 428
# Identity:     281/428 (65.7%)
# Similarity:   281/428 (65.7%)
# Gaps:          58/428 (13.6%)
# Score: 868.0
# 
#
#=======================================

BSNT_04673___      1 TTGAGTGAAGACAAAA---TGGATCTCTATTTGCAGCAAGGAATGTATGG     47
                     .||||   .|||||||   |.||.||.|||||.|||||.||.|||||.||
RBAM_028850__      1 ATGAG---CGACAAAACGGTTGACCTTTATTTACAGCAGGGGATGTACGG     47

BSNT_04673___     48 GCCTTTGGAGACAAAGCCTGACGAGCGCCATTTGTTTTTAGGCTCTTTAA     97
                     .|||.||.||||.||.||.||.||.||||||||.|||||||||||..|..
RBAM_028850__     48 CCCTCTGCAGACGAAACCGGATGAACGCCATTTATTTTTAGGCTCGCTGC     97

BSNT_04673___     98 GAGAAAGAGTCGTTTTGGCACTGACGAAAGGACAGGTGCTTAGAAGCAAA    147
                     |.|||||||||.|..|.||.||||||||.||.||||||||     |||||
RBAM_028850__     98 GTGAAAGAGTCATCATTGCCCTGACGAAGGGGCAGGTGCT-----GCAAA    142

BSNT_04673___    148 -----CCGTATAAAGAGGCGGAGCACGAGCTGAAAAACAGCCATAACGTC    192
                          ||||||.||||.|.|.|.||.|.|||||||   ||||..||.|.|
RBAM_028850__    143 AGCAGCCGTATGAAGAAGTGAAACAGGCGCTGAAA---AGCCGAAAAGAC    189

BSNT_04673___    193 AC---CCTTTTGGTTAATGGAGAGCTTCAGTATCAGTCTTACTCTCCTTA    239
                     .|   .||.|...|.||.|||..|||.|.||||||..||||.||.||.||
RBAM_028850__    190 GCGGTGCTCTATATAAACGGAAGGCTCCCGTATCATGCTTATTCACCATA    239

BSNT_04673___    240 TATCCAAA---TGGCGAA----CCGGTACGGAGTGC------CCTTCAAG    276
                     |||  .||   ||.||.|    |||||     ||.|      ||.|||  
RBAM_028850__    240 TAT--GAAGCTTGCCGCACTTGCCGGT-----GTCCGAAGCTCCGTCA--    280

BSNT_04673___    277 ATTGTATCTGATCTTCAGTTTCATACGCCTTTAGGCCTCGTTATTGCGGC    326
                         ||||.||||||||.||..|.|||||..|.|||||.|||.||||.||
RBAM_028850__    281 ----TATCGGATCTTCAATTCGAAACGCCGCTCGGCCTGGTTTTTGCCGC    326

BSNT_04673___    327 TGA-CATCGCTGTGAATCGTGA----ATTGATATATATTCAGGACGACAT    371
                     .|| .|| ||.|||||.|.|||    |||    ||..|.|||||.|||||
RBAM_028850__    327 CGATTAT-GCCGTGAACCTTGACGGCATT----TACGTACAGGATGACAT    371

BSNT_04673___    372 TTATAATCGGTCAGTGCTGAAATCTTAA    399
                     ||.|.|.||.|||.|.||||||||||||
RBAM_028850__    372 TTTTCAGCGCTCACTCCTGAAATCTTAA    399


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