Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04669 and RBAM_028810
See
Amino acid alignment /
Visit
BSNT_04669 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:08
# Commandline: needle
# -asequence dna-align/BSNT_04669___yuzC.1.9828.seq
# -bsequence dna-align/RBAM_028810___yuzC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04669___yuzC-RBAM_028810___yuzC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04669___yuzC-RBAM_028810___yuzC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04669___yuzC
# 2: RBAM_028810___yuzC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 425
# Identity: 215/425 (50.6%)
# Similarity: 215/425 (50.6%)
# Gaps: 139/425 (32.7%)
# Score: 516.5
#
#
#=======================================
BSNT_04669___ 1 ATGAGATATCGTTA--------TCCCTGGTTT----------TACGTGTA 32
|||...|||...|| ||||||.||| |||..|.|
RBAM_028810__ 1 ATGCATTATTTGTATCCATGCTTCCCTGTTTTCGCCGCGCCATACCGGCA 50
BSNT_04669___ 33 TCCGTATGAGGTACGCC--GTCCGCCCGCTCCTGCCAACA-ATATTGATA 79
||| |.|||| ||||.||.|.||..|| |.| ||.||||
RBAM_028810__ 51 TCC--------TGCGCCCAGTCCCCCGGTTCACGC--AGATATTTTGA-- 88
BSNT_04669___ 80 CCTTTATCCGTTCAGCG--------AGGCAGGCCGCAGGGATATTTGCGG 121
||||| || |.||.||.||.||..|.|.||
RBAM_028810__ 89 ------------CAGCGTCCGCAAAAG--AAGCTGCGGGCATGCTGGAGG 124
BSNT_04669___ 122 ATGCCCAGCTCGTTCTCGGCCGCATTGCG-GGCTCGCGG--------GAG 162
|||| ||.|.|.|| |.||||| ||||..||| |||
RBAM_028810__ 125 ATGC---GCGCCTGCT------CCTTGCGCGGCTGTCGGCGTCAAAAGAG 165
BSNT_04669___ 163 CTCTCGCGCCGCATTCTGACCGCAGCCGAGCAGTCCGAT---AAAC--AA 207
||..|||||||.||.||.|||||||| |||.|| || |.|| .|
RBAM_028810__ 166 CTTGCGCGCCGTATCCTCACCGCAGC---GCAATC--ATCTGACACCGCA 210
BSNT_04669___ 208 ACCATCAAGCGCCTGATCAAACAAATGGGTGTCCGGCA------------ 245
.|..|||||||.||.||.||.|| |.||||||
RBAM_028810__ 211 GCGGTCAAGCGGCTCATTAAGCA-------GACCGGCATCAAAACTGACT 253
BSNT_04669___ 246 -TGAAGTGGATACGGTCTTTAATCCCGACGGCATCTATATCAGCCTTATC 294
|||.||| ||| |.||||||||||||||||..|.||||.||..||
RBAM_028810__ 254 TTGACGTG---ACG---TATAATCCCGACGGCATCCGTGTCAGTCTGGTC 297
BSNT_04669___ 295 GGAACGCAAAGCCGAATCATTCTTGCTTTGCGGTGGTCAGAGGACCGCAA 344
.||..|||||||||..|.||..|.||..|..|||||||.|
RBAM_028810__ 298 AGAGAGCAAAGCCGGTTTATCATCGCCCTCAGGTGGTCGG---------- 337
BSNT_04669___ 345 TCATTTTGCGTCCATAAGATTATGA 369
|.|||
RBAM_028810__ 338 ------------CTTAA-------- 342
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.