Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04646 and RBAM_028650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:06
# Commandline: needle
# -asequence dna-align/BSNT_04646___yufO.1.9828.seq
# -bsequence dna-align/RBAM_028650___yufO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04646___yufO-RBAM_028650___yufO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04646___yufO-RBAM_028650___yufO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04646___yufO
# 2: RBAM_028650___yufO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1539
# Identity: 1198/1539 (77.8%)
# Similarity: 1198/1539 (77.8%)
# Gaps: 12/1539 ( 0.8%)
# Score: 4592.0
#
#
#=======================================
BSNT_04646___ 1 ATGGAATATGTCATTGAAATGCTCAATATCCGCAAGGCGTTTCCAGGTAT 50
.||||.|||.|||||||||||||.|||||.|||||||.||||||.||.||
RBAM_028650__ 1 GTGGATTATATCATTGAAATGCTTAATATACGCAAGGAGTTTCCCGGAAT 50
BSNT_04646___ 51 CGTCGCCAATGACAATATCAATCTTCAAGTCAAAAAAGGCGAAATACACG 100
||||||||||||..|..|||..||||||||.|||||||||||||||||||
RBAM_028650__ 51 CGTCGCCAATGATGACGTCACGCTTCAAGTGAAAAAAGGCGAAATACACG 100
BSNT_04646___ 101 CGTTGCTCGGTGAAAACGGAGCGGGGAAATCAACGTTGATGAATGTCCTT 150
|..|.||||||||||||||.||.||.|||||.||..|.|||||.||..|.
RBAM_028650__ 101 CCCTTCTCGGTGAAAACGGCGCCGGAAAATCGACACTCATGAACGTTTTA 150
BSNT_04646___ 151 TTCGGGCTGTATCAGCCGGAGCGGGGTGAAATTCGGGTGCGCGGCGAGAA 200
|||||.||||||||||||||....||.||.||.||||||||.||||| |.
RBAM_028650__ 151 TTCGGCCTGTATCAGCCGGAAAAAGGCGAGATCCGGGTGCGGGGCGA-AC 199
BSNT_04646___ 201 G-GTGCACATCAACAGCCCGAACAAAGCGAATGACCTTGGAATTGGAATG 249
| ||.|||||||||||||||||||||||.||.||.||.||.||.||.|||
RBAM_028650__ 200 GCGTTCACATCAACAGCCCGAACAAAGCCAACGATCTCGGCATCGGGATG 249
BSNT_04646___ 250 GTGCACCAGCACTTTATGCTTGTTGACACCTTTACAGTTGCTGAAAATAT 299
|||||||||||.|||||||||||.||.||||||||.||..|.||||||||
RBAM_028650__ 250 GTGCACCAGCATTTTATGCTTGTGGATACCTTTACCGTCTCAGAAAATAT 299
BSNT_04646___ 300 TATTCTCGGGAAGGAGCCAAAGAAGTTT-GGCAGAATTGACCGGAAGCGT 348
.||||||||.||.|||||.|| ||.||| |||.||||||||.|..||||.
RBAM_028650__ 300 CATTCTCGGAAAAGAGCCGAA-AACTTTCGGCCGAATTGACAGACAGCGC 348
BSNT_04646___ 349 GCTGGCCAAGAGGTGCAGGACATTTCCGATCGATACGGCCTGCAGATCCA 398
||.|.||..||.||||..||.||||||||.||.|||||||||||.||..|
RBAM_028650__ 349 GCCGCCCGGGACGTGCGCGATATTTCCGACCGTTACGGCCTGCACATTGA 398
BSNT_04646___ 399 TCCTGAAGCAAAAGCAGCTGACATATCAGTCGGTATGCAGCAGCGCGCAG 448
|||||||||.||||..||.||.||.||.|||||||||||||||||.||.|
RBAM_028650__ 399 TCCTGAAGCCAAAGTTGCCGATATTTCCGTCGGTATGCAGCAGCGGGCGG 448
BSNT_04646___ 449 AAATATTAAAAACCCTCTACCGCGGTGCCGACATTCTGATTTTTGATGAA 498
||||||||||.|||||||||.|.||.|||||||||||.||||||||.||.
RBAM_028650__ 449 AAATATTAAAGACCCTCTACAGGGGCGCCGACATTCTCATTTTTGACGAG 498
BSNT_04646___ 499 CCGACGGCTGTTTTGACGCCTCATGAAATTAAGGAACTGATGCAAATTAT 548
|||||.||.||..||||.||.||.||||||.|.||||||||.||.|||||
RBAM_028650__ 499 CCGACCGCGGTGCTGACTCCGCACGAAATTCAAGAACTGATTCAGATTAT 548
BSNT_04646___ 549 GAAGAACCTGGTCAAAGAAGGGAAGTCCATCATCTTAATCACCCATAAGC 598
|||.||.||.||.||.|||||.||.||.|||||..|.||||||||.||..
RBAM_028650__ 549 GAAAAATCTTGTAAATGAAGGAAAATCAATCATTCTCATCACCCACAAAT 598
BSNT_04646___ 599 TGAAAGAGATTATGGAGATTTGTGACCGCGTTACGGTTATCCGTAAAGGA 648
|.||||||||||||||..|.||.|||||.||.||..|.|||||.||||||
RBAM_028650__ 599 TAAAAGAGATTATGGAAGTCTGCGACCGTGTCACCATCATCCGGAAAGGA 648
BSNT_04646___ 649 AAAGGCATCAAAACCCTTGATGTCCGTGATACAAACCAAGACGAACTCGC 698
||||||||.|.|||.||.||||||....||||..|.|||||.|||||.||
RBAM_028650__ 649 AAAGGCATTACAACACTCGATGTCGCACATACGGATCAAGATGAACTGGC 698
BSNT_04646___ 699 CAGTCTAATGGTCGGCCGCGAGGTATCGTTCAAAACTGA-AAAGAGAGCT 747
.||.||.||||||||.|||||.||.||.|||||.||.|| |||.| |||.
RBAM_028650__ 699 AAGCCTTATGGTCGGACGCGAAGTGTCATTCAAGACGGATAAACA-AGCG 747
BSNT_04646___ 748 GCTCAGCCGGGAGCGGAAGTGCTTGCGAT---TGACGGCATAACTGTAAA 794
||..|.|||..|...|||||||||.|..| |||.| ||||.||.||
RBAM_028650__ 748 GCCGATCCGAAACAAGAAGTGCTTTCACTTTCTGATG---TAACGGTTAA 794
BSNT_04646___ 795 GGATACCCGCGGAATAGAGACAGTCAGAGATTTGTCTCTTTCTGTCAAAG 844
.||..|.|||||..|.|||.|.||||.|.|..|.||.||.||.||||.||
RBAM_028650__ 795 AGACGCGCGCGGCGTTGAGGCGGTCAAACAGCTCTCCCTCTCAGTCAGAG 844
BSNT_04646___ 845 CGGGAGAAATAGTCGGCTTAGCAGGCGTCGACGGAAACGGGCAATCAGAG 894
|.||.|||||.||||||.|.||.|||||.|||||||||||.||.||.||.
RBAM_028650__ 845 CCGGTGAAATCGTCGGCATTGCGGGCGTTGACGGAAACGGCCAGTCTGAA 894
BSNT_04646___ 895 CTGATCGAAGCGGTGACAGGACTCCGCAAAACAGATTCAGGAACAATCAC 944
.|.||.|||||..|.|||||.|||.|.|||||..||.|.||.||.|||||
RBAM_028650__ 895 TTAATTGAAGCCATTACAGGTCTCAGAAAAACGAATGCCGGCACGATCAC 944
BSNT_04646___ 945 CTTAAACGGAAAACAGATCCAAAACCTGACGCCAAGAAAAATCACTGAAT 994
.||||||||.||||||.|.||||||.||.||||.||.|||.||||||||.
RBAM_028650__ 945 GTTAAACGGCAAACAGCTGCAAAACATGCCGCCCAGGAAAGTCACTGAAG 994
BSNT_04646___ 995 CCGGGATCGGGCATATTCCTCAGGATCGCCATAAACACGGTCTCGTCCTT 1044
||||.||||||||||||||.|||||..|.|||||||||||.|||||||||
RBAM_028650__ 995 CCGGCATCGGGCATATTCCGCAGGACAGGCATAAACACGGGCTCGTCCTT 1044
BSNT_04646___ 1045 GATTTTCCAATCGGAGAGAATATCCTGCTGCAAAGCTATTACAAAAAGCC 1094
||||||||.||||||||.||||||.||||||||||.||||||.|||||||
RBAM_028650__ 1045 GATTTTCCGATCGGAGAAAATATCGTGCTGCAAAGTTATTACCAAAAGCC 1094
BSNT_04646___ 1095 GTATTCAGCATTGGGCGTTTTACATAAAGGCGAAATGTACAAAAAAGCAC 1144
.||.||..|.||.|||.|.|||.|||||..|...||.||..|.|||||.|
RBAM_028650__ 1095 CTACTCTTCTTTCGGCATATTAAATAAACACACGATTTATGACAAAGCGC 1144
BSNT_04646___ 1145 GCAGCCTGATCAGCGAGTACGACGTCAGAACGCCGGATGAATATACACAC 1194
|.|.||||||.|..||.|||||.||||||||.||.|||||||||||.|..
RBAM_028650__ 1145 GAAACCTGATTAAAGAATACGATGTCAGAACACCTGATGAATATACGCCT 1194
BSNT_04646___ 1195 GCTCGGGCATTGTCAGGCGGAAACCAGCAAAAAGCGATTATCGGGCGGGA 1244
||.||.||..|.||.||.||.||.||||||||.||.||||||||.|||||
RBAM_028650__ 1195 GCGCGCGCTCTCTCCGGAGGGAATCAGCAAAAGGCCATTATCGGCCGGGA 1244
BSNT_04646___ 1245 AATAGACCGAAATCCTGATTTATTAATTGCCGCCCAGCCGACTCGCGGCC 1294
|.|.|||.|||||||.|||.|.||||||||.|||||||||||.||.||.|
RBAM_028650__ 1245 AGTGGACAGAAATCCGGATCTTTTAATTGCGGCCCAGCCGACGCGGGGAC 1294
BSNT_04646___ 1295 TTGATGTCGGAGCGATTGAATTTGTCCATAAAAAGCTCATTGAGCAGCGT 1344
|.||||||||.|||||||||||.|||||||||||||||||||||||||||
RBAM_028650__ 1295 TCGATGTCGGCGCGATTGAATTCGTCCATAAAAAGCTCATTGAGCAGCGT 1344
BSNT_04646___ 1345 GATGCCGGGAAAGCCGTTCTTCTCCTCTCGTTTGAGCTTGAAGAAATTAT 1394
||.|||||.|||||.||.|||||..|.||.|||||.|||||.|||||.||
RBAM_028650__ 1345 GACGCCGGTAAAGCGGTGCTTCTGTTATCTTTTGAACTTGATGAAATAAT 1394
BSNT_04646___ 1395 GAATCTCAGTGACAGAATCGCCGTTATTTTTGAAGGACGCATTATCGCCA 1444
|||||||||.||..|.||||||||.||.||||||||..||||.|||||.|
RBAM_028650__ 1395 GAATCTCAGCGATCGCATCGCCGTCATCTTTGAAGGCAGCATCATCGCAA 1444
BSNT_04646___ 1445 GCGTTAATCCGCAGGAAACCACTGAACAGGAGCTTGGTCTCTTGATGGCA 1494
.|||.|||||||..|||||.|..||.||||||||.||.||.||.|||||.
RBAM_028650__ 1445 ACGTCAATCCGCTTGAAACAAACGAGCAGGAGCTCGGACTTTTAATGGCG 1494
BSNT_04646___ 1495 GGAAGCACGCAAAAGGAAGCGGGGAAAGCAAATGGTTAA 1533
|||||.|.|||||.|||.|||||||||.||.|||.||||
RBAM_028650__ 1495 GGAAGTAAGCAAATGGAGGCGGGGAAAACACATGATTAA 1533
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