Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04643 and RBAM_028630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:06
# Commandline: needle
# -asequence dna-align/BSNT_04643___yufM.1.9828.seq
# -bsequence dna-align/RBAM_028630___yufM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04643___yufM-RBAM_028630___yufM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04643___yufM-RBAM_028630___yufM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04643___yufM
# 2: RBAM_028630___yufM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 715
# Identity: 533/715 (74.5%)
# Similarity: 533/715 (74.5%)
# Gaps: 47/715 ( 6.6%)
# Score: 2061.0
#
#
#=======================================
BSNT_04643___ 1 ---------------------------------ATGGTGGGTGAATTAAA 17
|||||||||||||||||
RBAM_028630__ 1 ATGATTAATGTACTCATAGTTGAAGACGACCCCATGGTGGGTGAATTAAA 50
BSNT_04643___ 18 TAAACGATACTTAAGCCAAATAGATGGCTTTCAGCTGAAAGGCATCGCTT 67
||||||.||..|.|||||.||.||.||.||||||||||||||.|||||.|
RBAM_028630__ 51 TAAACGCTATCTCAGCCAGATTGAAGGATTTCAGCTGAAAGGGATCGCAT 100
BSNT_04643___ 68 CTTCCTTTCAAAGCGCTCTGCATATTTTAGGCGAGCACCATATCGACCTC 117
|.||||||||||||||.|||||..|..|..|||||||.||||||||.|||
RBAM_028630__ 101 CATCCTTTCAAAGCGCGCTGCACGTGCTGAGCGAGCATCATATCGATCTC 150
BSNT_04643___ 118 ATTTTGCTTGATATTTATATGCCGGGAAAAAACGGGCTGGAACTGCTGAC 167
||..|.|||||.|||||.||||||||||||||||||||.||.||..|.||
RBAM_028630__ 151 ATCCTTCTTGACATTTACATGCCGGGAAAAAACGGGCTTGAGCTATTAAC 200
BSNT_04643___ 168 GGAATTGAGAGCC-----CATAATGAAGCGGTTGACGTGATTGTCATCTC 212
|||| |.|| ||.||||||.|||||||.||.||.|||||.||
RBAM_028630__ 201 GGAA-----ATCCGCAAACAAAATGAATCGGTTGATGTCATCGTCATTTC 245
BSNT_04643___ 213 AGCGGCCAGCGAGCTTGACGTAATCAAGAAAACACTTCGGTACGGAGCTG 262
.||.||.||||||||.|||||.|||||.|||||.|||||||||||.||.|
RBAM_028630__ 246 GGCCGCAAGCGAGCTGGACGTCATCAAAAAAACGCTTCGGTACGGCGCCG 295
BSNT_04643___ 263 TCGATTATTTAATCAAACCGTTTGAATTTGAACGTTTCCAAACGGCTTTG 312
|||||||||||||||||||.|||||||||||.||.||.|||||.|||.|.
RBAM_028630__ 296 TCGATTATTTAATCAAACCATTTGAATTTGACCGCTTTCAAACCGCTCTT 345
BSNT_04643___ 313 TCTGATTACAGACGAAAACAAAAGGTGTATTCAA-CCCATCGCAACATGA 361
||.||.||||||||.||.||.||.||.|| |||| |.||..|.|.|||||
RBAM_028630__ 346 TCCGACTACAGACGCAAGCAGAAAGTTTA-TCAATCACACAGAAGCATGA 394
BSNT_04643___ 362 GCCAAAAAGAACTGGACGCCGAGCTTTTTCAAAAGAAAGAAGCAACAGAA 411
..||.||||||.||||.||||||||||||||||||||||||||..|.|||
RBAM_028630__ 395 CACAGAAAGAATTGGATGCCGAGCTTTTTCAAAAGAAAGAAGCGGCGGAA 444
BSNT_04643___ 412 AAAGTGCAGCTTCCTAAAGGCCTGACAAAAAGCACGCTGAAGCTGATCTG 461
||.||.||.|||||.||.||..||||||||||||||||.||.||.|||||
RBAM_028630__ 445 AAGGTTCACCTTCCGAAGGGATTGACAAAAAGCACGCTTAAACTCATCTG 494
BSNT_04643___ 462 GTCCAGTATCCAGTCATTTGAAAATGAATCTTTTACGACAGAAGACTTGG 511
|.|.||.||..||||.||.|...|.|..||||||||.||.|||||..|.|
RBAM_028630__ 495 GGCGAGCATTGAGTCTTTCGGTGACGGCTCTTTTACCACGGAAGATCTCG 544
BSNT_04643___ 512 CAAAGCACACAGAAATCTCTCAAGTATCCATACGAAAATA-CTTAAAGTT 560
|.|||||.||.||||||||.|||||.|||||.||.||||| |||||| ||
RBAM_028630__ 545 CCAAGCATACTGAAATCTCGCAAGTCTCCATCCGGAAATACCTTAAA-TT 593
BSNT_04643___ 561 TCTTGAAGATGTACAAGTTCTGAATGTAGAAATGGCGTACGGAACGATCG 610
|||.|||||..|||||||.|||||||||||.|||||||||||.|||||||
RBAM_028630__ 594 TCTGGAAGACATACAAGTGCTGAATGTAGAGATGGCGTACGGCACGATCG 643
BSNT_04643___ 611 GAAGACCTGTGTTTCAGTACAACGTCAACAACAGTAACCTTAACGGAATA 660
|.|||||.||.||.||.||..|..||||||.|.|.||..|.|.|.|.||.
RBAM_028630__ 644 GCAGACCCGTCTTCCAATATCATATCAACACCGGCAATGTCAGCAGCATC 693
BSNT_04643___ 661 AAGCAATATCTATAA 675
||.||||||.|||||
RBAM_028630__ 694 AAACAATATTTATAA 708
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