Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04633 and RBAM_028540

See Amino acid alignment / Visit BSNT_04633 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:05
# Commandline: needle
#    -asequence dna-align/BSNT_04633___patB.1.9828.seq
#    -bsequence dna-align/RBAM_028540___patB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04633___patB-RBAM_028540___patB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04633___patB-RBAM_028540___patB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04633___patB
# 2: RBAM_028540___patB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1228
# Identity:     849/1228 (69.1%)
# Similarity:   849/1228 (69.1%)
# Gaps:         128/1228 (10.4%)
# Score: 2797.5
# 
#
#=======================================

BSNT_04633___      1 ATGAACTTTGATAAACGAGAAGAACGCCTTGGCACCCAATCGGTCAAATG     50
                     ||||||||||||...||||||.|.||.||||||||.||||||||.|||||
RBAM_028540__      1 ATGAACTTTGATCTTCGAGAAAACCGTCTTGGCACACAATCGGTGAAATG     50

BSNT_04633___     51 GGACAAAACAGGCGAA----TTATTTGGCGTGACAGACGCACTCCCGATG     96
                     |||||    |||||.|    |||||.|||||..|.||.||.||.||||||
RBAM_028540__     51 GGACA----AGGCGGAAGCGTTATTCGGCGTATCGGATGCGCTTCCGATG     96

BSNT_04633___     97 TGGGTGGCGGATATGGATTTTCGCGCGCCAGAAGCAATAACTGAAGCGTT    146
                     |||||.||.|||||||||||.|||||.||.|||||..|.|||||.||.||
RBAM_028540__     97 TGGGTTGCCGATATGGATTTCCGCGCTCCCGAAGCGGTCACTGACGCCTT    146

BSNT_04633___    147 AAAAGAGCGTCTTGACCACGGTATTTTTGGTTATACAACTCCAGATCAAA    196
                     |||||..||.|||||||||||.||.||.|||||.||..||||.||..|||
RBAM_028540__    147 AAAAGCCCGCCTTGACCACGGCATATTCGGTTACACGTCTCCTGACGAAA    196

BSNT_04633___    197 AAACGAGGGATGCTGTGTGCG---GATGGATGCAAAACAGGCACGGCT--    241
                     |.||.||.||.||.||   ||   .||||.|..|.|...|||||||||  
RBAM_028540__    197 ACACAAGAGAAGCCGT---CGCTTCATGGCTTGAGACGCGGCACGGCTAC    243

BSNT_04633___    242 -GGAAGGTGAATCCGGAAAGCATCACATTCAGCCCCGGCGTTGTAACGGC    290
                      ||...|   ||||.|.|||||||.|.|||||.|||||.|||||.|||||
RBAM_028540__    244 CGGCCCG---ATCCCGCAAGCATCGCGTTCAGTCCCGGTGTTGTCACGGC    290

BSNT_04633___    291 CTTGAGCATGGCGGTACAAGCTTTTACGGAGCCGGGCGATCAAGTAGTTG    340
                     ..|.||||||||.||||||||.|||||.||.||||||||||..|| ||||
RBAM_028540__    291 AATCAGCATGGCCGTACAAGCCTTTACCGAACCGGGCGATCCGGT-GTTG    339

BSNT_04633___    341 -TTCAGCCTCCAGTTTATACGCCTTTTTACCATATGGT---GGAGAA-AA    385
                      ||||..|.||.||.||||||||||||||.||.|||.|   |||.|| ||
RBAM_028540__    340 ATTCAATCACCGGTGTATACGCCTTTTTATCAGATGATCAAGGAAAACAA    389

BSNT_04633___    386 ACGGCCGGCACATTTTACATAATCCGCTGCTAGAAGAAGACGGCGCATA-    434
                     |||||.||    ||||||||||.|||.|.|..||||||.||||||..|| 
RBAM_028540__    390 ACGGCAGG----TTTTACATAACCCGTTACGGGAAGAAAACGGCGTCTAC    435

BSNT_04633___    435 TGCAATGGATTTTGAAGATTTGGAGACGAAGCTTAGTGACC---------    475
                     || .|||||||||||.|||.|.||||..||||    |||.|         
RBAM_028540__    436 TG-TATGGATTTTGAGGATCTTGAGAAAAAGC----TGAACGATTCTGAG    480

BSNT_04633___    476 --CAAGCGTTACATTGTTTATTTTATGCAATCCTCATAACCCTTCTGG--    521
                       |||||       ||.|.|||.|.||.|||||.||.||.||.||.||  
RBAM_028540__    481 GTCAAGC-------TGATGATTCTTTGTAATCCCCACAATCCGTCCGGCA    523

BSNT_04633___    522 --GCGTTCATGGGGCCGGGAAGA-TTTACTGAAGCTAGGCGAAT---TGT    565
                       |||    |||.|||||||.|| .||| |||||||   ||.||   |||
RBAM_028540__    524 GAGCG----TGGAGCCGGGATGAGCTTA-TGAAGCT---CGGATCGCTGT    565

BSNT_04633___    566 GCCTTGAGCATGGCGTAACAGTTGTATCGGATGAAATCCATTCCGATTTA    615
                     ||...|..|||..|||.||.||.||.||.||.||.||.||||||||.||.
RBAM_028540__    566 GCGCCGCCCATAACGTCACCGTCGTTTCTGACGAGATACATTCCGACTTG    615

BSNT_04633___    616 ATGCTGTACGGACACAAA----CACACGCCGTTCGCTTCGCTCTCTGACG    661
                     |||||||||||    |||    ||.|||||.||||||||.||.|||||.|
RBAM_028540__    616 ATGCTGTACGG----AAAGCCGCATACGCCTTTCGCTTCTCTGTCTGAGG    661

BSNT_04633___    662 A--TTTCGCTGATATTTCTGTGACATGTGCTGCTCCAAGCAAAACATTTA    709
                     |  ||.|||.|  |||||.||.||.||||..||.||.|||||.||.||||
RBAM_028540__    662 AGTTTGCGCGG--ATTTCCGTTACTTGTGTCGCGCCGAGCAAGACGTTTA    709

BSNT_04633___    710 ATATCGCCGG-ATTGCAGGCTTCAGCGATCATTATTCCGGATCGCCTGAA    758
                     ||||.||||| ||| |||||.||.||.||.||.|||||.|||||....||
RBAM_028540__    710 ATATTGCCGGCATT-CAGGCATCCGCCATTATCATTCCCGATCGGTATAA    758

BSNT_04633___    759 GCGCGCCAAGTTTTCCGCAAGCCTTCAGCGCAATGGTTTAG-GCGGAA--    805
                     |||.||.||.||.|||||          ||||.||..|.|| .|||||  
RBAM_028540__    759 GCGGGCGAAATTCTCCGC----------CGCATTGCATCAGAACGGAATT    798

BSNT_04633___    806 -------TGAACGCGTTTGCCGTCACTGCAATCGAAGCCGCGTATTCAAA    848
                            |.|||.|.|||||.||..|.|||||||||||.||.|||.||||
RBAM_028540__    799 TCCAGCCTCAACACATTTGCGGTTGCAGCAATCGAAGCGGCCTATACAAA    848

BSNT_04633___    849 AGGCGGACCGTGGCTTGATGAATTGATCACTTACATTGAGAAAAACATGA    898
                     .||.||.||.||||||||.|...||||..||||||||||....||.||||
RBAM_028540__    849 GGGAGGCCCTTGGCTTGACGCGCTGATTCCTTACATTGAAGGGAATATGA    898

BSNT_04633___    899 ACGAAGCGGAAGCCTTTTTGAGCACCGAGCTGCCAAAGGTCAAAATGATG    948
                     |....||.||.|.||||||.||.|..||..||||.||.|||...||||||
RBAM_028540__    899 AATTGGCTGAGGACTTTTTAAGAAAAGAATTGCCGAAAGTCCGCATGATG    948

BSNT_04633___    949 AAGCCGGATGCATCATACTTGATTTGGCTCGACTTCAGCGCTTACGGCTT    998
                     |||||.||.||.||.||.|||||.|||.|.||.|||||||..|||||.||
RBAM_028540__    949 AAGCCTGACGCTTCCTATTTGATCTGGATGGATTTCAGCGAATACGGATT    998

BSNT_04633___    999 GTCCGATACAGAGCTCCAGCAAAGAATGCTAAAAAAAGGAAAAGTTATTT   1048
                     .||.|||.|.||||||.|..||||||||||.||||||||.|||.|.||.|
RBAM_028540__    999 TTCGGATGCCGAGCTCAAAGAAAGAATGCTCAAAAAAGGGAAAATCATAT   1048

BSNT_04633___   1049 TAGAGCCCGGGACGAAATACGGGCCTGGCGGAGAAGGATTTATGCGCCTG   1098
                     |||||||.||.||.||||||||.||.|||||.||||||||||||.|.||.
RBAM_028540__   1049 TAGAGCCGGGAACAAAATACGGACCGGGCGGCGAAGGATTTATGAGACTT   1098

BSNT_04633___   1099 AACG-CGGGATGCTCTCTTGCAACC-CTGC------AGGACGGCCTGCGC   1140
                     ||.| |||      ||.|| ||.|| |.||      ||.|.|||.|..| 
RBAM_028540__   1099 AATGTCGG------CTGTT-CAGCCGCCGCCGTAAAAGAAGGGCTTAAG-   1140

BSNT_04633___   1141 CGCATCAAAGC--CGCATTATCG-TAA-   1164
                     .|.||.|||||  |||    ||| |.| 
RBAM_028540__   1141 AGAATGAAAGCAGCGC----TCGCTTAG   1164


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