Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04633 and RBAM_028540
See
Amino acid alignment /
Visit
BSNT_04633 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:05
# Commandline: needle
# -asequence dna-align/BSNT_04633___patB.1.9828.seq
# -bsequence dna-align/RBAM_028540___patB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04633___patB-RBAM_028540___patB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04633___patB-RBAM_028540___patB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04633___patB
# 2: RBAM_028540___patB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1228
# Identity: 849/1228 (69.1%)
# Similarity: 849/1228 (69.1%)
# Gaps: 128/1228 (10.4%)
# Score: 2797.5
#
#
#=======================================
BSNT_04633___ 1 ATGAACTTTGATAAACGAGAAGAACGCCTTGGCACCCAATCGGTCAAATG 50
||||||||||||...||||||.|.||.||||||||.||||||||.|||||
RBAM_028540__ 1 ATGAACTTTGATCTTCGAGAAAACCGTCTTGGCACACAATCGGTGAAATG 50
BSNT_04633___ 51 GGACAAAACAGGCGAA----TTATTTGGCGTGACAGACGCACTCCCGATG 96
||||| |||||.| |||||.|||||..|.||.||.||.||||||
RBAM_028540__ 51 GGACA----AGGCGGAAGCGTTATTCGGCGTATCGGATGCGCTTCCGATG 96
BSNT_04633___ 97 TGGGTGGCGGATATGGATTTTCGCGCGCCAGAAGCAATAACTGAAGCGTT 146
|||||.||.|||||||||||.|||||.||.|||||..|.|||||.||.||
RBAM_028540__ 97 TGGGTTGCCGATATGGATTTCCGCGCTCCCGAAGCGGTCACTGACGCCTT 146
BSNT_04633___ 147 AAAAGAGCGTCTTGACCACGGTATTTTTGGTTATACAACTCCAGATCAAA 196
|||||..||.|||||||||||.||.||.|||||.||..||||.||..|||
RBAM_028540__ 147 AAAAGCCCGCCTTGACCACGGCATATTCGGTTACACGTCTCCTGACGAAA 196
BSNT_04633___ 197 AAACGAGGGATGCTGTGTGCG---GATGGATGCAAAACAGGCACGGCT-- 241
|.||.||.||.||.|| || .||||.|..|.|...|||||||||
RBAM_028540__ 197 ACACAAGAGAAGCCGT---CGCTTCATGGCTTGAGACGCGGCACGGCTAC 243
BSNT_04633___ 242 -GGAAGGTGAATCCGGAAAGCATCACATTCAGCCCCGGCGTTGTAACGGC 290
||...| ||||.|.|||||||.|.|||||.|||||.|||||.|||||
RBAM_028540__ 244 CGGCCCG---ATCCCGCAAGCATCGCGTTCAGTCCCGGTGTTGTCACGGC 290
BSNT_04633___ 291 CTTGAGCATGGCGGTACAAGCTTTTACGGAGCCGGGCGATCAAGTAGTTG 340
..|.||||||||.||||||||.|||||.||.||||||||||..|| ||||
RBAM_028540__ 291 AATCAGCATGGCCGTACAAGCCTTTACCGAACCGGGCGATCCGGT-GTTG 339
BSNT_04633___ 341 -TTCAGCCTCCAGTTTATACGCCTTTTTACCATATGGT---GGAGAA-AA 385
||||..|.||.||.||||||||||||||.||.|||.| |||.|| ||
RBAM_028540__ 340 ATTCAATCACCGGTGTATACGCCTTTTTATCAGATGATCAAGGAAAACAA 389
BSNT_04633___ 386 ACGGCCGGCACATTTTACATAATCCGCTGCTAGAAGAAGACGGCGCATA- 434
|||||.|| ||||||||||.|||.|.|..||||||.||||||..||
RBAM_028540__ 390 ACGGCAGG----TTTTACATAACCCGTTACGGGAAGAAAACGGCGTCTAC 435
BSNT_04633___ 435 TGCAATGGATTTTGAAGATTTGGAGACGAAGCTTAGTGACC--------- 475
|| .|||||||||||.|||.|.||||..|||| |||.|
RBAM_028540__ 436 TG-TATGGATTTTGAGGATCTTGAGAAAAAGC----TGAACGATTCTGAG 480
BSNT_04633___ 476 --CAAGCGTTACATTGTTTATTTTATGCAATCCTCATAACCCTTCTGG-- 521
||||| ||.|.|||.|.||.|||||.||.||.||.||.||
RBAM_028540__ 481 GTCAAGC-------TGATGATTCTTTGTAATCCCCACAATCCGTCCGGCA 523
BSNT_04633___ 522 --GCGTTCATGGGGCCGGGAAGA-TTTACTGAAGCTAGGCGAAT---TGT 565
||| |||.|||||||.|| .||| ||||||| ||.|| |||
RBAM_028540__ 524 GAGCG----TGGAGCCGGGATGAGCTTA-TGAAGCT---CGGATCGCTGT 565
BSNT_04633___ 566 GCCTTGAGCATGGCGTAACAGTTGTATCGGATGAAATCCATTCCGATTTA 615
||...|..|||..|||.||.||.||.||.||.||.||.||||||||.||.
RBAM_028540__ 566 GCGCCGCCCATAACGTCACCGTCGTTTCTGACGAGATACATTCCGACTTG 615
BSNT_04633___ 616 ATGCTGTACGGACACAAA----CACACGCCGTTCGCTTCGCTCTCTGACG 661
||||||||||| ||| ||.|||||.||||||||.||.|||||.|
RBAM_028540__ 616 ATGCTGTACGG----AAAGCCGCATACGCCTTTCGCTTCTCTGTCTGAGG 661
BSNT_04633___ 662 A--TTTCGCTGATATTTCTGTGACATGTGCTGCTCCAAGCAAAACATTTA 709
| ||.|||.| |||||.||.||.||||..||.||.|||||.||.||||
RBAM_028540__ 662 AGTTTGCGCGG--ATTTCCGTTACTTGTGTCGCGCCGAGCAAGACGTTTA 709
BSNT_04633___ 710 ATATCGCCGG-ATTGCAGGCTTCAGCGATCATTATTCCGGATCGCCTGAA 758
||||.||||| ||| |||||.||.||.||.||.|||||.|||||....||
RBAM_028540__ 710 ATATTGCCGGCATT-CAGGCATCCGCCATTATCATTCCCGATCGGTATAA 758
BSNT_04633___ 759 GCGCGCCAAGTTTTCCGCAAGCCTTCAGCGCAATGGTTTAG-GCGGAA-- 805
|||.||.||.||.||||| ||||.||..|.|| .|||||
RBAM_028540__ 759 GCGGGCGAAATTCTCCGC----------CGCATTGCATCAGAACGGAATT 798
BSNT_04633___ 806 -------TGAACGCGTTTGCCGTCACTGCAATCGAAGCCGCGTATTCAAA 848
|.|||.|.|||||.||..|.|||||||||||.||.|||.||||
RBAM_028540__ 799 TCCAGCCTCAACACATTTGCGGTTGCAGCAATCGAAGCGGCCTATACAAA 848
BSNT_04633___ 849 AGGCGGACCGTGGCTTGATGAATTGATCACTTACATTGAGAAAAACATGA 898
.||.||.||.||||||||.|...||||..||||||||||....||.||||
RBAM_028540__ 849 GGGAGGCCCTTGGCTTGACGCGCTGATTCCTTACATTGAAGGGAATATGA 898
BSNT_04633___ 899 ACGAAGCGGAAGCCTTTTTGAGCACCGAGCTGCCAAAGGTCAAAATGATG 948
|....||.||.|.||||||.||.|..||..||||.||.|||...||||||
RBAM_028540__ 899 AATTGGCTGAGGACTTTTTAAGAAAAGAATTGCCGAAAGTCCGCATGATG 948
BSNT_04633___ 949 AAGCCGGATGCATCATACTTGATTTGGCTCGACTTCAGCGCTTACGGCTT 998
|||||.||.||.||.||.|||||.|||.|.||.|||||||..|||||.||
RBAM_028540__ 949 AAGCCTGACGCTTCCTATTTGATCTGGATGGATTTCAGCGAATACGGATT 998
BSNT_04633___ 999 GTCCGATACAGAGCTCCAGCAAAGAATGCTAAAAAAAGGAAAAGTTATTT 1048
.||.|||.|.||||||.|..||||||||||.||||||||.|||.|.||.|
RBAM_028540__ 999 TTCGGATGCCGAGCTCAAAGAAAGAATGCTCAAAAAAGGGAAAATCATAT 1048
BSNT_04633___ 1049 TAGAGCCCGGGACGAAATACGGGCCTGGCGGAGAAGGATTTATGCGCCTG 1098
|||||||.||.||.||||||||.||.|||||.||||||||||||.|.||.
RBAM_028540__ 1049 TAGAGCCGGGAACAAAATACGGACCGGGCGGCGAAGGATTTATGAGACTT 1098
BSNT_04633___ 1099 AACG-CGGGATGCTCTCTTGCAACC-CTGC------AGGACGGCCTGCGC 1140
||.| ||| ||.|| ||.|| |.|| ||.|.|||.|..|
RBAM_028540__ 1099 AATGTCGG------CTGTT-CAGCCGCCGCCGTAAAAGAAGGGCTTAAG- 1140
BSNT_04633___ 1141 CGCATCAAAGC--CGCATTATCG-TAA- 1164
.|.||.||||| ||| ||| |.|
RBAM_028540__ 1141 AGAATGAAAGCAGCGC----TCGCTTAG 1164
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.