Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04631 and RBAM_028530

See Amino acid alignment / Visit BSNT_04631 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:05
# Commandline: needle
#    -asequence dna-align/BSNT_04631___yugE.1.9828.seq
#    -bsequence dna-align/RBAM_028530___yugE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04631___yugE-RBAM_028530___yugE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04631___yugE-RBAM_028530___yugE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04631___yugE
# 2: RBAM_028530___yugE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 271
# Identity:     207/271 (76.4%)
# Similarity:   207/271 (76.4%)
# Gaps:          11/271 ( 4.1%)
# Score: 803.0
# 
#
#=======================================

BSNT_04631___      1 ---------ATGGAAGAAAGTCAAGCGGTCAGGGAAATGATTAAGATCAT     41
                              |||||||||||.||||||||||.|||||||||.||.|||||
RBAM_028530__      1 GTGATGAAAATGGAAGAAAGCCAAGCGGTCATGGAAATGATGAAAATCAT     50

BSNT_04631___     42 TGCCAAATGGGACCCGTTTAAATATGGAGAAGAGTTTTACGAAACGGAGG     91
                     ||||||.||||||||||||||||||||||||||.|||||.||.||.||.|
RBAM_028530__     51 TGCCAAGTGGGACCCGTTTAAATATGGAGAAGATTTTTATGAGACAGAAG    100

BSNT_04631___     92 CTGTTGATGTCGTGCAGGCAGTCTATGATGAAGACGATCCCGACGTGCTG    141
                     |.||.||..||||.|||||.|||||...|||||||....|||||..||||
RBAM_028530__    101 CCGTCGACATCGTTCAGGCCGTCTACAGTGAAGACCGCGCCGACAAGCTG    150

BSNT_04631___    142 GCGAAAAG-CATTCAGCAAATATTTGAAACTTCTTTTGAACAAACGCTGC    190
                     || |..|| |||||||.|.||.||||||.||||.|||||.||||.|||.|
RBAM_028530__    151 GC-AGCAGCCATTCAGGATATCTTTGAAGCTTCATTTGAGCAAAAGCTTC    199

BSNT_04631___    191 CGATCGACAGCTGCCGGGAAGTGGCTGGCCAGCTTTTATTCATTAAAAAC    240
                     |||||||..|.||||...|.|..||||..||||||.|.||.||.|||.|.
RBAM_028530__    200 CGATCGAAGGATGCCAAAAGGCCGCTGAGCAGCTTCTGTTTATAAAAGAA    249

BSNT_04631___    241 AGCAGCTCCTGCACGCCTTAA    261
                     ||||||||||||||.||||||
RBAM_028530__    250 AGCAGCTCCTGCACCCCTTAA    270


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