Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04628 and RBAM_028520

See Amino acid alignment / Visit BSNT_04628 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:05
# Commandline: needle
#    -asequence dna-align/BSNT_04628___yugF.1.9828.seq
#    -bsequence dna-align/RBAM_028520___yugF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04628___yugF-RBAM_028520___yugF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04628___yugF-RBAM_028520___yugF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04628___yugF
# 2: RBAM_028520___yugF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 842
# Identity:     605/842 (71.9%)
# Similarity:   605/842 (71.9%)
# Gaps:          40/842 ( 4.8%)
# Score: 2075.0
# 
#
#=======================================

BSNT_04628___      1 ATGGAGGCGGTTTCACCAATAA----GGCGGTTTACGGTCGATGGAGTCA     46
                     |||||.||.||||||||.||.|    |||.|    ||.|.||.|||||..
RBAM_028520__      1 ATGGAAGCTGTTTCACCGATTAAACGGGCCG----CGATAGACGGAGTTG     46

BSNT_04628___     47 A--TGTATACTACGAACATTATCAAAATCCCGGCAGGCAAACGCTGGTCT     94
                     |  |||||  |||||.||||||.|||||||||||||.||.||.||.||||
RBAM_028520__     47 AGCTGTAT--TACGAGCATTATGAAAATCCCGGCAGACAGACACTCGTCT     94

BSNT_04628___     95 GCGTACACGGTTTTTTATCATCTGCATTCAGCTTCAGAAAAGTAATTCCT    144
                     |||||||||||||||||||.||.||||||||||||||||||.|.||.||.
RBAM_028520__     95 GCGTACACGGTTTTTTATCTTCGGCATTCAGCTTCAGAAAACTGATCCCG    144

BSNT_04628___    145 CTCCTTCGGGACAAGTACGACATCATCGCGCTTGATTTGCCTCCTTTCGG    194
                     ||.||..|..||.|.||.||.||.|||||..||||..|||||||||||||
RBAM_028520__    145 CTGCTCAGAAACCATTATGATATTATCGCCGTTGACCTGCCTCCTTTCGG    194

BSNT_04628___    195 CCAATCTGAAAAATCAAGAACGTTTATCTATACCTATCAAAACCTTGCTA    244
                     .|||||.|||||.|||.|.||.||..|.|||||.||...||||||.||.|
RBAM_028520__    195 GCAATCGGAAAAGTCACGGACTTTCGTATATACTTACGCAAACCTCGCCA    244

BSNT_04628___    245 AGCTTGTCATTGGGATTTTGGAGCA-CTTGCAAGTGAAACA----GGCTG    289
                     |||||.|.||.||..||.||||..| ||.|     |.|.||    |||.|
RBAM_028520__    245 AGCTTCTGATCGGACTTCTGGAAAAGCTCG-----GTATCAGCCGGGCCG    289

BSNT_04628___    290 TGCTTGTCGGGCATTCTATGGGCGGGCAGATATCGCTGTCTGCTGCTCTC    339
                     ..||..||||.|||||.||||||||.|||||.||..|.||.||..||||.
RBAM_028520__    290 CACTCATCGGCCATTCAATGGGCGGCCAGATTTCCTTATCCGCGTCTCTT    339

BSNT_04628___    340 CAAAAACCTGAGCTTTTTTCAAAGGTTGTGCTGCTTTGCAGTTCAGGGTA    389
                     |..|.|||.|||||||||||.||..|.||.|||||.|||||.||.|||||
RBAM_028520__    340 CTCAGACCCGAGCTTTTTTCTAAAATCGTCCTGCTGTGCAGCTCGGGGTA    389

BSNT_04628___    390 TTTAAAACGTTCACACCCGACGATCATTTTCGGGACCCATATCCCGTATT    439
                     ||||||.||.||.||||||.||||.||.||||||||.|||.||||.|.||
RBAM_028520__    390 TTTAAAGCGCTCGCACCCGTCGATTATATTCGGGACGCATCTCCCTTGTT    439

BSNT_04628___    440 TTCATCTTTACATCAAACGCTGGCTCTCGAAAGAAGGCGTGATGAAAAAT    489
                     ||.|.||.||..|.||....|||||.||.|||||.||||||.||||.||.
RBAM_028520__    440 TTGACCTGTATCTTAAGTATTGGCTTTCAAAAGACGGCGTGCTGAACAAC    489

BSNT_04628___    490 TTATTAAATGTGGTGCATGACAAATCGCTGATTGATGAGGAGATGATCGA    539
                     .|.||||||||.||.||.|||....||||.||.|||.||||.|||||.||
RBAM_028520__    490 CTGTTAAATGTCGTTCACGACCGGACGCTTATCGATCAGGAAATGATTGA    539

BSNT_04628___    540 CGGCTATGGCAGACCATTT-CAGGACGAGCAGATTTTCAAAGCCATGACA    588
                     |||.||.|..|.||||||| || |||...|.||||||||||||.||||||
RBAM_028520__    540 CGGTTACGAAAAACCATTTACA-GACCGCCGGATTTTCAAAGCGATGACA    588

BSNT_04628___    589 AGGTTTATCCGCCACAGAGAAGGAGATTTAGAACCCGAGCAATTGAAGAA    638
                     |||||||||.|.||.||.||.||.||||||||.||||||.|.||||||||
RBAM_028520__    589 AGGTTTATCAGACATAGGGAGGGCGATTTAGAGCCCGAGGATTTGAAGAA    638

BSNT_04628___    639 AATGAACAAGCCTGCTCTATTGATTTGGGGCGAGGAGGATCGAATTGTCC    688
                     |.||.|.||.||.|||||.||.||.|||||.||.||.||.||..|.||.|
RBAM_028520__    639 AGTGCAAAACCCCGCTCTTTTAATCTGGGGAGAAGAAGACCGGGTCGTTC    688

BSNT_04628___    689 CAATGG----AGATCGGTAAACGGCTGCACGCAGATTTGCCTAATTCCGT    734
                     |   ||    || ||||.||||||||.||.|..||..||||..|||||.|
RBAM_028520__    689 C---GGTCTCAG-TCGGAAAACGGCTTCATGACGACCTGCCGGATTCCAT    734

BSNT_04628___    735 GCTGTACTCACTTGGCCAG---ACCGGACATCTGGTGCCTGAAGAACGGC    781
                     .|||||.|||||   |.||   ||.||.||.||.||.||.|||||.||.|
RBAM_028520__    735 TCTGTATTCACT---CAAGGATACGGGGCACCTCGTACCCGAAGAGCGCC    781

BSNT_04628___    782 CTGAACTTGTTTCTGAACACATTGCTGATTTTA-TCAATTAA    822
                     |.||..|||||||.||.|..|||..|||.|||| |||||.| 
RBAM_028520__    782 CGGAGTTTGTTTCGGAGCGGATTTTTGAATTTATTCAATAA-    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04628 and RBAM_028520

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
