Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04618 and RBAM_028420

See Amino acid alignment / Visit BSNT_04618 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:04
# Commandline: needle
#    -asequence dna-align/BSNT_04618.1.9828.seq
#    -bsequence dna-align/RBAM_028420___yugM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04618-RBAM_028420___yugM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04618-RBAM_028420___yugM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04618
# 2: RBAM_028420___yugM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 522
# Identity:     242/522 (46.4%)
# Similarity:   242/522 (46.4%)
# Gaps:         216/522 (41.4%)
# Score: 510.5
# 
#
#=======================================

BSNT_04618         1 GTGAGAAAGCTGACTGGCATTTGCCGGTCGGCTTTTTATAAAATCAGAAA     50
                              .|||        ||  ||||.||.||||.||||....||||
RBAM_028420__      1 ---------ATGA--------TG--GGTCAGCCTTTTTTAAACCGTGAAA     31

BSNT_04618        51 GGTGCTGATGTTCATGAAACAATTGGT------------TAAACATCTCA     88
                     |||| |||||   |||    |||||.|            |||.|||..|.
RBAM_028420__     32 GGTG-TGATG---ATG----AATTGATGCGACTCTTATGTAAGCATGCCG     73

BSNT_04618        89 TCATTGCCGGTTTTTCTGCAGCTATTTTAAGT---TTC----CT-----T    126
                     |||||.|||..|.|||.||.||||||    ||   |||    ||     |
RBAM_028420__     74 TCATTTCCGTCTGTTCCGCCGCTATT----GTCTATTCGGCACTAAAACT    119

BSNT_04618       127 ATCTCCTTTG-ATGCCGTGTATACAGAGTTTTCTT-CAAGCTTTGGCGGC    174
                     .|||||  || ||.||               |||| |||.|        |
RBAM_028420__    120 GTCTCC--TGAATCCC---------------TCTTACAAAC--------C    144

BSNT_04618       175 ACGCTGTCACATTTTTTCATCCACGCCTTTCTTCTCATTGGTTTGCCGCT    224
                     |..|||      |||||      |||.||.|.|||          |.|||
RBAM_028420__    145 ATCCTG------TTTTT------CGCTTTCCCTCT----------CGGCT    172

BSNT_04618       225 TGCCCTTTTTACCGATGCGGTACAT----CGGATTTTGCATTTAAAAC-G    269
                     ||     |||||       |.||||    |||         .|.|||| |
RBAM_028420__    173 TG-----TTTAC-------GGACATGGTCCGG---------CTGAAACTG    201

BSNT_04618       270 AA------CC-----CATACTCTTTTCACTAAATTAGGACTCTATGCAAC    308
                     ||      ||     ||..|.||..||||.||.|...|.||||||||..|
RBAM_028420__    202 AAGATTGGCCGGATGCAGTCGCTGATCACGAAGTGCTGTCTCTATGCCGC    251

BSNT_04618       309 GGTTGTTTATGTGTCTTGGGATTCAGCTGTATGGCTTGCAGCGGCAATGG    358
                     .|||.|.|||.|.||...|||   |||.|| |..||     |.|||||.|
RBAM_028420__    252 CGTTTTCTATATTTCAACGGA---AGCCGT-TCTCT-----CCGCAATTG    292

BSNT_04618       359 CTGTTTAC-----TTCTTAATTGAATGCGC--TT---TCTTTC------C    392
                         |.||     ||| |.|||||||||||  ||   ||||||      |
RBAM_028420__    293 ----TGACGTATGTTC-TGATTGAATGCGCCGTTACCTCTTTCCAGCGTC    337

BSNT_04618       393 TGTTGGCCGCGCGAAAGAAACAACGAT--TTCC----------ATGTAG-    429
                     |||..|||||.|          .||||  ||||          |||.|| 
RBAM_028420__    338 TGTCTGCCGCTC----------CCGATTCTTCCCGGGCGCCGTATGAAGA    377

BSNT_04618       429 ----------------------    429
                                           
RBAM_028420__    378 TGCCGCAGAGCGGGGACGCTAA    399


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