Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04618 and RBAM_028420
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:04
# Commandline: needle
# -asequence dna-align/BSNT_04618.1.9828.seq
# -bsequence dna-align/RBAM_028420___yugM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04618-RBAM_028420___yugM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04618-RBAM_028420___yugM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04618
# 2: RBAM_028420___yugM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 522
# Identity: 242/522 (46.4%)
# Similarity: 242/522 (46.4%)
# Gaps: 216/522 (41.4%)
# Score: 510.5
#
#
#=======================================
BSNT_04618 1 GTGAGAAAGCTGACTGGCATTTGCCGGTCGGCTTTTTATAAAATCAGAAA 50
.||| || ||||.||.||||.||||....||||
RBAM_028420__ 1 ---------ATGA--------TG--GGTCAGCCTTTTTTAAACCGTGAAA 31
BSNT_04618 51 GGTGCTGATGTTCATGAAACAATTGGT------------TAAACATCTCA 88
|||| ||||| ||| |||||.| |||.|||..|.
RBAM_028420__ 32 GGTG-TGATG---ATG----AATTGATGCGACTCTTATGTAAGCATGCCG 73
BSNT_04618 89 TCATTGCCGGTTTTTCTGCAGCTATTTTAAGT---TTC----CT-----T 126
|||||.|||..|.|||.||.|||||| || ||| || |
RBAM_028420__ 74 TCATTTCCGTCTGTTCCGCCGCTATT----GTCTATTCGGCACTAAAACT 119
BSNT_04618 127 ATCTCCTTTG-ATGCCGTGTATACAGAGTTTTCTT-CAAGCTTTGGCGGC 174
.||||| || ||.|| |||| |||.| |
RBAM_028420__ 120 GTCTCC--TGAATCCC---------------TCTTACAAAC--------C 144
BSNT_04618 175 ACGCTGTCACATTTTTTCATCCACGCCTTTCTTCTCATTGGTTTGCCGCT 224
|..||| ||||| |||.||.|.||| |.|||
RBAM_028420__ 145 ATCCTG------TTTTT------CGCTTTCCCTCT----------CGGCT 172
BSNT_04618 225 TGCCCTTTTTACCGATGCGGTACAT----CGGATTTTGCATTTAAAAC-G 269
|| ||||| |.|||| ||| .|.|||| |
RBAM_028420__ 173 TG-----TTTAC-------GGACATGGTCCGG---------CTGAAACTG 201
BSNT_04618 270 AA------CC-----CATACTCTTTTCACTAAATTAGGACTCTATGCAAC 308
|| || ||..|.||..||||.||.|...|.||||||||..|
RBAM_028420__ 202 AAGATTGGCCGGATGCAGTCGCTGATCACGAAGTGCTGTCTCTATGCCGC 251
BSNT_04618 309 GGTTGTTTATGTGTCTTGGGATTCAGCTGTATGGCTTGCAGCGGCAATGG 358
.|||.|.|||.|.||...||| |||.|| |..|| |.|||||.|
RBAM_028420__ 252 CGTTTTCTATATTTCAACGGA---AGCCGT-TCTCT-----CCGCAATTG 292
BSNT_04618 359 CTGTTTAC-----TTCTTAATTGAATGCGC--TT---TCTTTC------C 392
|.|| ||| |.||||||||||| || |||||| |
RBAM_028420__ 293 ----TGACGTATGTTC-TGATTGAATGCGCCGTTACCTCTTTCCAGCGTC 337
BSNT_04618 393 TGTTGGCCGCGCGAAAGAAACAACGAT--TTCC----------ATGTAG- 429
|||..|||||.| .|||| |||| |||.||
RBAM_028420__ 338 TGTCTGCCGCTC----------CCGATTCTTCCCGGGCGCCGTATGAAGA 377
BSNT_04618 429 ---------------------- 429
RBAM_028420__ 378 TGCCGCAGAGCGGGGACGCTAA 399
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