Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04616 and RBAM_028410
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:04
# Commandline: needle
# -asequence dna-align/BSNT_04616___yugN.1.9828.seq
# -bsequence dna-align/RBAM_028410___yugN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04616___yugN-RBAM_028410___yugN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04616___yugN-RBAM_028410___yugN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04616___yugN
# 2: RBAM_028410___yugN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 422
# Identity: 288/422 (68.2%)
# Similarity: 288/422 (68.2%)
# Gaps: 34/422 ( 8.1%)
# Score: 928.0
#
#
#=======================================
BSNT_04616___ 1 ATGATACCA--ATACCTTCCGCGATAGATGGGCAGTCTTTTCTGCTTCAA 48
||||| || |||||.||..|..|.||.|||||.||.|||.|.||.|..
RBAM_028410__ 1 ATGAT--CAGCATACCATCTTCACTTGAGGGGCAATCGTTTTTACTCCGC 48
BSNT_04616___ 49 GAACTGGAACAAGTGATGAAGCCGCTCGGTTATGTGATAAAC-------G 91
|||||||||||.|||.||||.|||.|||||||| || |
RBAM_028410__ 49 GAACTGGAACAGGTGCTGAAACCGATCGGTTAT-------ACCATCGGAG 91
BSNT_04616___ 92 GCGGCTGGGAATACGATCATGGCTACTTTGATTATAAAATTGATGAT-AG 140
||||||||||.||.||.|..||.|.|||||||||.||||||...||| ||
RBAM_028410__ 92 GCGGCTGGGAGTATGACCGCGGGTTCTTTGATTACAAAATTTCCGATCAG 141
BSNT_04616___ 141 AGACGGCTATTTATTTTTAAGAATTCCCGT------CAATGCGGTACAGG 184
|||||||||||||||.|..|.||.||.|| .|||..||.|||
RBAM_028410__ 142 -GACGGCTATTTATTTCTCCGCATCCCTGTTGAAGCAAATAAGGGACA-- 188
BSNT_04616___ 185 GCAGTCTCGATGAACGAGGGGCGGCCGTCCGGATCGGAACGCCATTTATG 234
.||.||||||||.|||||.|||||....|||||.||.||.|||.||
RBAM_028410__ 189 ----CCTGGATGAACGGGGGGCCGCCGTTACAATCGGCACACCCTTTTTG 234
BSNT_04616___ 235 CTGAGACAGGTGTTTCAGGCGGATGTTGACGATCACGCCGAGGGAGGGCC 284
|||||.||.||.|.|||||.|||....||.||||||||.|..||.||...
RBAM_028410__ 235 CTGAGGCACGTCTATCAGGAGGAAACGGATGATCACGCAGGCGGCGGTGT 284
BSNT_04616___ 285 TTTCCAATCACTGTTTAATCAATTTTCCGAACCGGAAAGGCGGGACGCGG 334
|||..|.|||.|.||.||.|||||.|||||.|||.||.|||||||.||.|
RBAM_028410__ 285 TTTTGAGTCATTATTCAACCAATTCTCCGAGCCGAAACGGCGGGATGCAG 334
BSNT_04616___ 335 AAATTGATCCG-GCATTTTTGGATATCGGCGCCTCTCTCGTGAAAGAATT 383
.|||||| ||| .|||.|...|||||||||..|||.||.||||||||..|
RBAM_028410__ 335 CAATTGA-CCGCTCATATACAGATATCGGCATCTCGCTTGTGAAAGAGCT 383
BSNT_04616___ 384 GGAGGATGTTCTGTTACACTAG 405
|||.||.||.|||.|.||.||.
RBAM_028410__ 384 GGAAGACGTCCTGCTGCATTAA 405
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