Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04616 and RBAM_028410

See Amino acid alignment / Visit BSNT_04616 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:04
# Commandline: needle
#    -asequence dna-align/BSNT_04616___yugN.1.9828.seq
#    -bsequence dna-align/RBAM_028410___yugN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04616___yugN-RBAM_028410___yugN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04616___yugN-RBAM_028410___yugN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04616___yugN
# 2: RBAM_028410___yugN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 422
# Identity:     288/422 (68.2%)
# Similarity:   288/422 (68.2%)
# Gaps:          34/422 ( 8.1%)
# Score: 928.0
# 
#
#=======================================

BSNT_04616___      1 ATGATACCA--ATACCTTCCGCGATAGATGGGCAGTCTTTTCTGCTTCAA     48
                     |||||  ||  |||||.||..|..|.||.|||||.||.|||.|.||.|..
RBAM_028410__      1 ATGAT--CAGCATACCATCTTCACTTGAGGGGCAATCGTTTTTACTCCGC     48

BSNT_04616___     49 GAACTGGAACAAGTGATGAAGCCGCTCGGTTATGTGATAAAC-------G     91
                     |||||||||||.|||.||||.|||.||||||||       ||       |
RBAM_028410__     49 GAACTGGAACAGGTGCTGAAACCGATCGGTTAT-------ACCATCGGAG     91

BSNT_04616___     92 GCGGCTGGGAATACGATCATGGCTACTTTGATTATAAAATTGATGAT-AG    140
                     ||||||||||.||.||.|..||.|.|||||||||.||||||...||| ||
RBAM_028410__     92 GCGGCTGGGAGTATGACCGCGGGTTCTTTGATTACAAAATTTCCGATCAG    141

BSNT_04616___    141 AGACGGCTATTTATTTTTAAGAATTCCCGT------CAATGCGGTACAGG    184
                      |||||||||||||||.|..|.||.||.||      .|||..||.|||  
RBAM_028410__    142 -GACGGCTATTTATTTCTCCGCATCCCTGTTGAAGCAAATAAGGGACA--    188

BSNT_04616___    185 GCAGTCTCGATGAACGAGGGGCGGCCGTCCGGATCGGAACGCCATTTATG    234
                         .||.||||||||.|||||.|||||....|||||.||.||.|||.||
RBAM_028410__    189 ----CCTGGATGAACGGGGGGCCGCCGTTACAATCGGCACACCCTTTTTG    234

BSNT_04616___    235 CTGAGACAGGTGTTTCAGGCGGATGTTGACGATCACGCCGAGGGAGGGCC    284
                     |||||.||.||.|.|||||.|||....||.||||||||.|..||.||...
RBAM_028410__    235 CTGAGGCACGTCTATCAGGAGGAAACGGATGATCACGCAGGCGGCGGTGT    284

BSNT_04616___    285 TTTCCAATCACTGTTTAATCAATTTTCCGAACCGGAAAGGCGGGACGCGG    334
                     |||..|.|||.|.||.||.|||||.|||||.|||.||.|||||||.||.|
RBAM_028410__    285 TTTTGAGTCATTATTCAACCAATTCTCCGAGCCGAAACGGCGGGATGCAG    334

BSNT_04616___    335 AAATTGATCCG-GCATTTTTGGATATCGGCGCCTCTCTCGTGAAAGAATT    383
                     .|||||| ||| .|||.|...|||||||||..|||.||.||||||||..|
RBAM_028410__    335 CAATTGA-CCGCTCATATACAGATATCGGCATCTCGCTTGTGAAAGAGCT    383

BSNT_04616___    384 GGAGGATGTTCTGTTACACTAG    405
                     |||.||.||.|||.|.||.||.
RBAM_028410__    384 GGAAGACGTCCTGCTGCATTAA    405


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