Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04604 and RBAM_028360
See
Amino acid alignment /
Visit
BSNT_04604 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:03
# Commandline: needle
# -asequence dna-align/BSNT_04604___yugU.1.9828.seq
# -bsequence dna-align/RBAM_028360___yugU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04604___yugU-RBAM_028360___yugU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04604___yugU-RBAM_028360___yugU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04604___yugU
# 2: RBAM_028360___yugU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 423
# Identity: 313/423 (74.0%)
# Similarity: 313/423 (74.0%)
# Gaps: 24/423 ( 5.7%)
# Score: 1196.5
#
#
#=======================================
BSNT_04604___ 1 ATGCTGAAAACACTGCAAATCAAAACAACCAAACGAGATGAAATGATTGA 50
||||||||||.|.||||.||..||||||.||.|||.|||||||||||.||
RBAM_028360__ 1 ATGCTGAAAAAATTGCAGATTCAAACAAACAGACGGGATGAAATGATCGA 50
BSNT_04604___ 51 TATCACCCGGGAGGTGGAAGCATTTCTTCAAGAAACAGGTATAACGAGCG 100
.|||||.|..||.|..|||||.|||||.|...|||||||..|.|..|.||
RBAM_028360__ 51 CATCACACATGAAGCCGAAGCGTTTCTCCGCAAAACAGGCGTGAAAAACG 100
BSNT_04604___ 101 GCGCAGCGCTGATTTACTGTCCGCATACGACTGCGGGCATTACAATTAAT 150
|....|||||.||.||||||||.|||||.||.||.||||||||.||.|||
RBAM_028360__ 101 GTTTGGCGCTCATATACTGTCCCCATACAACCGCCGGCATTACCATAAAT 150
BSNT_04604___ 151 GAAAATGCCGATCCGGACGTCAAAAAAGATATGCTCAGAAGGTTTGATGA 200
|||||||||||||||||.||.||.|..|||||||||||||||||||||||
RBAM_028360__ 151 GAAAATGCCGATCCGGATGTGAAGAGGGATATGCTCAGAAGGTTTGATGA 200
BSNT_04604___ 201 GGTATATCCGTGGGAACATGAGCTGGACCGCCATATGGAGGGCAATACAG 250
..|.|||||||||||.||.||.||||||||.|||||||||||.|||||.|
RBAM_028360__ 201 AATGTATCCGTGGGAGCACGAACTGGACCGGCATATGGAGGGAAATACGG 250
BSNT_04604___ 251 CTGCACACATGAAGTCGAGTACGGTCGGAGCTTCACAGCATGTCATTGTG 300
|.|||||.|||||..|||||||...|||.||.||.|||||||||||..|.
RBAM_028360__ 251 CGGCACATATGAAAGCGAGTACAACCGGCGCCTCCCAGCATGTCATCATA 300
BSNT_04604___ 301 GAAAACGGCCGGCTCATTCTTGGAACGTGGCAGGGCATTTATTTCTGTGA 350
|||.||||.||.||.||.||.|||||.|||||||||.|||||||.||.||
RBAM_028360__ 301 GAAGACGGGCGCCTGATACTCGGAACATGGCAGGGCGTTTATTTTTGCGA 350
BSNT_04604___ 351 ATTTGACGGCCCTCGCACCCGGACATGCTATATCAAAAT----GATG--- 393
|||||||||.||.||.|.|.|.||.||.||||||||||| |.||
RBAM_028360__ 351 ATTTGACGGTCCGCGAAACAGAACCTGTTATATCAAAATACAGGCTGAAC 400
BSNT_04604___ 394 ----GGATAA------------- 399
|||.||
RBAM_028360__ 401 CGGAGGAAAACACAAATGAGTGA 423
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.