Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04600 and RBAM_028330

See Amino acid alignment / Visit BSNT_04600 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:03
# Commandline: needle
#    -asequence dna-align/BSNT_04600___tgl.1.9828.seq
#    -bsequence dna-align/RBAM_028330___tgl.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04600___tgl-RBAM_028330___tgl.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04600___tgl-RBAM_028330___tgl.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04600___tgl
# 2: RBAM_028330___tgl
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 774
# Identity:     547/774 (70.7%)
# Similarity:   547/774 (70.7%)
# Gaps:          66/774 ( 8.5%)
# Score: 1833.0
# 
#
#=======================================

BSNT_04600___      1 ------ATGATTATTGTATCAGGACAATTGCTCCGTCCCCAGGATATTGA     44
                           ||||||||..||||.||.|||.||||.||.||.|||||.||.|.
RBAM_028330__      1 GTGAAGATGATTATCATATCCGGCCAAGTGCTTCGGCCTCAGGACATCGC     50

BSNT_04600___     45 AAATTGGCAGATTGATCAAAATCTGAATCCGCTGT-TAAAAGAGATG---     90
                     .||.|||||||..||..|||..||...|||| |.| ||||.||..||   
RBAM_028330__     51 GAACTGGCAGACGGAAGAAAGCCTTGTTCCG-TATATAAATGAACTGCTC     99

BSNT_04600___     91 -ATTGAGACGCCTGTTCAGTTTGATTATCATTCAATTGCTGAACTGATGT    139
                      |||    |.||.||.||.||.|||||....||.||||||||||||||||
RBAM_028330__    100 AATT----CTCCCGTACAATTCGATTACGGGTCGATTGCTGAACTGATGT    145

BSNT_04600___    140 TTGAGCTTAAACTGCGGATG------AATATTGTAGCAGCGGCAA-AGAC    182
                     |.|||      .|||||.||      .|||||||.|.|||.|||| ||| 
RBAM_028330__    146 TCGAG------GTGCGGCTGCGCCGCCATATTGTGGAAGCCGCAAGAGA-    188

BSNT_04600___    183 GCTGCACAAAAGCGGGGCGAAGTTTGCCACTTTTTTAAAAACATACGGGA    232
                     .||||||..|...||.|.|||.|||||.|||||....|||||||||||.|
RBAM_028330__    189 ACTGCACGGATCAGGTGTGAAATTTGCAACTTTCGCCAAAACATACGGAA    238

BSNT_04600___    233 ATACAACGTATTGGAGGGTTTCACCGGAGGGCGCCTTGGAGCTGAAATAC    282
                     ||||..|.||||||||.||..|.|||||.||.||||||||||||||.|||
RBAM_028330__    239 ATACGGCTTATTGGAGAGTGACGCCGGAAGGAGCCTTGGAGCTGAAGTAC    288

BSNT_04600___    283 AGAATGCCGCCTTCAAAAGCGATTCGGGACATTGCAGAGAACGGCCCGTT    332
                     |||||.||..|||||||||||||||||||||||...||.||.||..||||
RBAM_028330__    289 AGAATCCCCGCTTCAAAAGCGATTCGGGACATTATTGAAAATGGGGCGTT    338

BSNT_04600___    333 TTATGCGTTTGAATGCGCAACCGCAATCGTTATCATTTATTACTTGGC--    380
                     |||.||.|||||||||||.|||||.||.|||.|.||||||||..||||  
RBAM_028330__    339 TTACGCATTTGAATGCGCTACCGCCATTGTTGTGATTTATTATCTGGCCG    388

BSNT_04600___    381 -CTTAATCGATACAATCGGTGAAGATAAATTCAATGCCAGCTTTGACAGA    429
                      |||||   |.||||||||||||||....||.||  ||.||.||..|.|.
RBAM_028330__    389 TCTTAA---AGACAATCGGTGAAGAACGGTTTAA--CCGGCGTTTCCGGG    433

BSNT_04600___    430 ATTAT---TTTATATGACTGGCATTATGAGAAATTGCCGATCTATACGGA    476
                     | |||   |||.|||||||||||.||||||.|..||||||||||.|||||
RBAM_028330__    434 A-TATCACTTTGTATGACTGGCACTATGAGCATCTGCCGATCTACACGGA    482

BSNT_04600___    477 AACAGGACACCACTTTTTCCTTGGAGATTGTTTGTATTTTAAGAATCCTG    526
                     |||.||.|.|||||||||.|..|||||||||||.||||||||.|||||||
RBAM_028330__    483 AACCGGCCGCCACTTTTTACGGGGAGATTGTTTATATTTTAAAAATCCTG    532

BSNT_04600___    527 AATTTGATCC-GCAAAAGGCGCAATGGAGAGGCGAAAATGTGATTTTACT    575
                     |.|||.|||| || ||||||.||.|||.|.||.||.|||||.|||.|..|
RBAM_028330__    533 ATTTTAATCCTGC-AAAGGCTCAGTGGCGGGGAGAGAATGTCATTGTGAT    581

BSNT_04600___    576 GGGGGAAGATAAATATTTTGCCCATGGTCTTGGAATCTTAAACG--GAAA    623
                     ||||.|.|||.|||||||.|||||.|||||.||.||..|.|.||  ||| 
RBAM_028330__    582 GGGGAATGATCAATATTTCGCCCACGGTCTCGGGATTCTGACCGCTGAA-    630

BSNT_04600___    624 GCAAATTAT----AGATAAGCTGAATTCTTTTAGGAAAAAAGGAGCCTTA    669
                      |||||.||    ||||    ||||||||||.||.||||||...|||.|.
RBAM_028330__    631 -CAAATCATCCAGAGAT----TGAATTCTTTAAGAAAAAAAAATGCCATG    675

BSNT_04600___    670 CAGTCAGCCTACCTTCTGTCT----CAGGCGACCAGACTGGATGTTCCGT    715
                     |||.|.||.||   |||| ||    |||||.||.||.||.||||..||..
RBAM_028330__    676 CAGCCGGCTTA---TCTG-CTTAACCAGGCAACAAGGCTTGATGCACCCG    721

BSNT_04600___    716 CTCTTT-TCCGCATCGTCCGCTAA    738
                     |.|||| ||.| |||.|.|..|||
RBAM_028330__    722 CGCTTTATCAG-ATCATGCATTAA    744


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04600 and RBAM_028330

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
