Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04597 and RBAM_028310
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:02
# Commandline: needle
# -asequence dna-align/BSNT_04597.1.9828.seq
# -bsequence dna-align/RBAM_028310___tlpA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04597-RBAM_028310___tlpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04597-RBAM_028310___tlpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04597
# 2: RBAM_028310___tlpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2029
# Identity: 1115/2029 (55.0%)
# Similarity: 1115/2029 (55.0%)
# Gaps: 542/2029 (26.7%)
# Score: 3656.5
#
#
#=======================================
BSNT_04597 0 -------------------------------------------------- 0
RBAM_028310__ 1 TTGAAAAAAACAGCAAAAAAAATCGCCAGAAAATCAATAGCCAAAAAACT 50
BSNT_04597 0 -------------------------------------------------- 0
RBAM_028310__ 51 GATCATTTCATTTTTACTGATCTTACTCATTCCGGTAGCAGTATTGGCTG 100
BSNT_04597 0 -------------------------------------------------- 0
RBAM_028310__ 101 CCGGCGCCTACCGTTCGGCGGCTTCATCCGTTGAAAAGCAAATGATGGAA 150
BSNT_04597 0 -------------------------------------------------- 0
RBAM_028310__ 151 AGCGCCGAAGGAAATGTGCAAATCTTAAACAATATGATTGATGACCGGAT 200
BSNT_04597 0 -------------------------------------------------- 0
RBAM_028310__ 201 CGGAATGTTTACAAAAAGCTCAGCATATTTCAGCGAATGGGCGACAAGCG 250
BSNT_04597 0 -------------------------------------------------- 0
RBAM_028310__ 251 CCAAATTTAAAGAAAAAAACCAAACGGAAATGCAAGAAAGGTTCAAGCAG 300
BSNT_04597 0 -------------------------------------------------- 0
RBAM_028310__ 301 TTTATTGAAAGCAATGATAAAGCGTCCGCCGTATTTTCAAGCAGCAAGGA 350
BSNT_04597 1 -------------------------------ATGCCAAGTGACTTTAA-- 17
|||||....||.||.||
RBAM_028310__ 351 AGGAACGTTTACCCGTTATCCGCATGCCGATATGCCGGCCGATTTCAACC 400
BSNT_04597 18 TGCTTTGGAACGAGATTGGTACAAAGAAGCAATGGCCAATAAAGGCAAAA 67
.|||| |||.||...|||||..|.|||||.||||..|||||||||.|||
RBAM_028310__ 401 CGCTT--GAAAGAAGCTGGTATCAGGAAGCCATGGAGAATAAAGGCCAAA 448
BSNT_04597 68 CAATTGTCACTGAGCCTTATGAATCGATTTCATCAGGAAAA--ATGGTCG 115
|.||..||||.||.||||||||.||.||.||| |..|||| |||||||
RBAM_028310__ 449 CCATCATCACAGACCCTTATGAGTCCATCTCA--AACAAAAAGATGGTCG 496
BSNT_04597 116 TCACCATCGCACGTCAAACGGTG---GATGGGTCAGGTGTTGTCGCCATT 162
|||||||.||.|| ..|||.| ||.||.|||||.||.|||||||||
RBAM_028310__ 497 TCACCATGGCCCG---CGCGGCGCAAGACGGATCAGGCGTCGTCGCCATT 543
BSNT_04597 163 GATATGAAAATTGATGA-CTTAGTCACTACCGCGAAAGGAATCAATATCG 211
|||||.|||||.||.|| ||.| ||||.|...|.||||.|.|.||.||||
RBAM_028310__ 544 GATATAAAAATCGACGATCTCA-TCACGATGACAAAAGAAGTGAACATCG 592
BSNT_04597 212 GAAAAGAAGGCTATGCTTTTATTTTGAGCCAAAACAAGAAAGTCATCGCC 261
||||||||||.||.||.|||||..|.|||.||||.||.||||.|.|.|||
RBAM_028310__ 593 GAAAAGAAGGATACGCCTTTATCCTCAGCAAAAATAAAAAAGCCGTTGCC 642
BSNT_04597 262 TACTCCGGAGAAAAAGCGGGAACAGAGCTAAAAGGGGACTGGGTTGATAA 311
|||...|..||||||||.||..|.|.|.||...||..|.||||||||||.
RBAM_028310__ 643 TACAGTGATGAAAAAGCCGGCGCGGCGGTATCGGGAAAATGGGTTGATAC 692
BSNT_04597 312 GCTCTACA--AGGATAAAAGCGGGGACTTTGAATATACGTACAAAGGCAA 359
..|.|.|| .||..|||| ||..||||||||||||||...||.||.||
RBAM_028310__ 693 ATTATTCAGCGGGCAAAAA--GGCAACTTTGAATATACGCTGAACGGAAA 740
BSNT_04597 360 AAAGAAAAAAATGGCATTTGCAACAAGCGAAACAACAGGCTGGAAAATCA 409
|..||||||||||||.|..|..||.|..|||.|.||.||||||||.||||
RBAM_028310__ 741 AGCGAAAAAAATGGCGTACGTGACCAATGAAGCGACGGGCTGGAAGATCA 790
BSNT_04597 410 GCGGCACGATGT--ATGCAAACGAGATTCACGATGCTGCAAGCAGGGTTC 457
||||.||.|||| .||.|| ||.||..|.|||||.|||||...|||||
RBAM_028310__ 791 GCGGAACCATGTCCGTGGAA--GAAATCAAGGATGCGGCAAGACCGGTTC 838
BSNT_04597 458 TGA-TCATGGC--TTCAATCGTTCTGGCGATTGCCATCGCAGCTGGAATG 504
||| || |||| || |||.|..|||||||.|||||.||.||.||.|||
RBAM_028310__ 839 TGACTC-TGGCCGTT--ATCATATTGGCGATAGCCATTGCCGCAGGGATG 885
BSNT_04597 505 A----CGGCGATTTATTTTGTGATTCGATCCATCACAAAGCCATTGAGAC 550
| | |||||||||||.||.||.||.||.||.||.||.||.|.||
RBAM_028310__ 886 ATTTTC----ATTTATTTTGTCATCCGCTCAATTACCAAACCGTTAAAAC 931
BSNT_04597 551 GCATTGTCGCATCCGCTGAAAAAATTAGTGAAGGCGATCTAACCGAAACG 600
|..|.||.||.||.||.||||||||.||....||.|||||.||.|||||.
RBAM_028310__ 932 GTCTCGTAGCTTCAGCGGAAAAAATCAGCAGCGGAGATCTGACGGAAACC 981
BSNT_04597 601 ATTGAAATCAATTCAAAAGATGAACTCGGCGTTCTGAGCGAGAGCTTCAA 650
|||||..|||..||..|||||||.||.|||||.||..|..|.||.||.||
RBAM_028310__ 982 ATTGATGTCAGCTCTCAAGATGAGCTGGGCGTGCTCGGTAAAAGTTTTAA 1031
BSNT_04597 651 TCATATGGCACACTCGCTTCGCTCGCTCATTCACGGGATCAAAGACTCAG 700
|||||||.||.|.||.||.||.|||||.|||||.||.||..|.|||||.|
RBAM_028310__ 1032 TCATATGACAGATTCACTCCGTTCGCTTATTCAGGGAATTCAGGACTCTG 1081
BSNT_04597 701 TAGAACACGTTGCCTCATCGTCTGAAGAGCTGACTGCATCGGCAGACCAG 750
|.|||||.||.||.||.||.||.||.||||||||.||.|||||.||.|||
RBAM_028310__ 1082 TTGAACATGTCGCTTCTTCCTCAGAGGAGCTGACGGCTTCGGCTGAGCAG 1131
BSNT_04597 751 ACAAGCAGAGCCACTGAGCACATTACGATGGCTATCGAGCAATTTTCAAA 800
||.||||.|||.||.||.||.||.||..|.||.||.||.||.|||||.||
RBAM_028310__ 1132 ACGAGCAAAGCAACGGAACATATCACCCTTGCGATTGAACAGTTTTCTAA 1181
BSNT_04597 801 CGGCAGTGAAAGCCAAAGCGAGAAAATAG---AAACGACAACCGAACAAA 847
.||.|..|||..||||||.||||..||.| ||.|||||.|| |||.
RBAM_028310__ 1182 TGGAACGGAAGACCAAAGTGAGAGTATTGATAAAGCGACAGCC---CAAG 1228
BSNT_04597 848 TTAATGAAATGAATGACGG------------------------------- 866
|.|||||.|||||.|||||
RBAM_028310__ 1229 TGAATGAGATGAAAGACGGGCTCAGTGATCTGGCGGAAGCGGCAGCCGTG 1278
BSNT_04597 867 --------------------ATTGGCAGAG----CTGGCGC--------- 883
||.|||.||| |.|||||
RBAM_028310__ 1279 GTGACGGAAACGTCAATTGAATCGGCGGAGATATCCGGCGCCGGTGAGCG 1328
BSNT_04597 884 --------------------GCCAAATGAACACAATTGACCATTCTGTAA 913
||||.|||..|.|.||||||||.||.||||
RBAM_028310__ 1329 GCTTGTCAAGAAAACAGCCGGCCAGATGGGCGCCATTGACCAATCCGTAA 1378
BSNT_04597 914 --AAGCAGCGGAACAAGTGGTGAAAGGGCTGGAGATCAAATCAAAGGATA 961
|| ||||||.|||||.||..|||||||.||..|||||||..||||.|
RBAM_028310__ 1379 GTAA--AGCGGAGCAAGTCGTACAAGGGCTTGAACTCAAATCGCAGGACA 1426
BSNT_04597 962 TCACGAATATTTTGCGTGTCATCAACGGCATTGCGGATCAAACCAATCTT 1011
||||.|..||||||||.|||||.|||||||||||.||||||||.|||||.
RBAM_028310__ 1427 TCACCAGCATTTTGCGCGTCATTAACGGCATTGCCGATCAAACGAATCTC 1476
BSNT_04597 1012 TTGGCTTTAAATGCCGCCATTGAAGCGGCCAGAGCGGGTGAATACGGACG 1061
.|.|||||||||||.||||||||||||||.||||||||.|||||||||||
RBAM_028310__ 1477 CTTGCTTTAAATGCAGCCATTGAAGCGGCAAGAGCGGGAGAATACGGACG 1526
BSNT_04597 1062 GGGCTTCTCAGTCGTCGCTGAGGAAGTGAGAAAGCTCGCGGTACAGTCGG 1111
.||.||.||||||||.||.||.||||||||||||||.||.||.||.||.|
RBAM_028310__ 1527 CGGTTTTTCAGTCGTTGCCGAAGAAGTGAGAAAGCTTGCCGTCCAATCCG 1576
BSNT_04597 1112 CTGACTCGGCAAAAGAAATTGAATCGCTGA--TCAGTGAAATAGTAAAAG 1159
|.||.||.||.||||||||.||||| ||.| ||| ||||||.||.||||
RBAM_028310__ 1577 CCGATTCAGCGAAAGAAATCGAATC-CTTAATTCA-TGAAATCGTCAAAG 1624
BSNT_04597 1160 AAATTCACACATCACT--GAACGTGCTTCAGTCCGTAAACAAAGAAGTTG 1207
|||||||.||.||.|| ||| ||||..|.|||||.||..|.||.||..
RBAM_028310__ 1625 AAATTCATACTTCGCTCGGAA--TGCTGGAATCCGTCAATCACGAGGTGA 1672
BSNT_04597 1208 AAACAGGGCTTGTCA--TGACGGATGAAACTAAACAGAGCTTCAAACATA 1255
|||..||.|| ||| |.|||||.|||||..||.|.||||||....|.|
RBAM_028310__ 1673 AAAGCGGACT--TCAGTTAACGGACGAAACGGAAAAAAGCTTCCGGGACA 1720
BSNT_04597 1256 TATCGC---AAATGACCAATCAAATTGCTTCCGAGCTGCAAAACATGAAT 1302
|.|| | ||| ||.|||||.|||||....||.||||||||.||||||
RBAM_028310__ 1721 TTTC-CGTTAAA--ACAAATCAGATTGCCGGTGAACTGCAAAATATGAAT 1767
BSNT_04597 1303 GCGACGGTTGAGGAGCTGTCAGCGGGAGCTCAAGAAATTTCCGCAGCTTC 1352
||.||.||.||..|.||.||.||.||..||||.|||.|.||....|||||
RBAM_028310__ 1768 GCAACCGTGGAACAACTTTCTGCCGGGTCTCAGGAAGTATCAAACGCTTC 1817
BSNT_04597 1353 AAATGATATCACAGCCATTTCTAAGGAAAGCTCGGATGGCATCCAAGATA 1402
|.|.||||||.|.|||.|.||.|...|||||.|||..|||||.||.||.|
RBAM_028310__ 1818 AGAGGATATCGCGGCCGTCTCCAGACAAAGCGCGGCCGGCATTCAGGACA 1867
BSNT_04597 1403 TCGCCGCTTCAGCTGAGGAACAGCTGGCATCCATGGAGGAGATTAGTTCA 1452
||||.|||||||||||.||.|||||.||.|||||||||||.||.|||||.
RBAM_028310__ 1868 TCGCGGCTTCAGCTGAAGAGCAGCTTGCGTCCATGGAGGAAATCAGTTCC 1917
BSNT_04597 1453 TCTGCACTGACGCTTGAAAGAATGTCTGAAGAACTCCGTGATCTGACAAA 1502
||.||..|.|||||.||||.||||.|.||||||.|.||.||.||||||||
RBAM_028310__ 1918 TCCGCCGTCACGCTGGAAAAAATGGCGGAAGAATTACGCGAACTGACAAA 1967
BSNT_04597 1503 ACAATTTAAAGTGGATAGAC----AATAG 1527
.|..||||| ||||.|| ||
RBAM_028310__ 1968 GCGTTTTAA----GATAAACTCTTAA--- 1989
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