Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04596 and RBAM_028300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:02
# Commandline: needle
# -asequence dna-align/BSNT_04596___mcpA.1.9828.seq
# -bsequence dna-align/RBAM_028300___mcpA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04596___mcpA-RBAM_028300___mcpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04596___mcpA-RBAM_028300___mcpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04596___mcpA
# 2: RBAM_028300___mcpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2021
# Identity: 1529/2021 (75.7%)
# Similarity: 1529/2021 (75.7%)
# Gaps: 67/2021 ( 3.3%)
# Score: 5609.0
#
#
#=======================================
BSNT_04596___ 1 ATGATGAAAAAAATACTCCAACTCATAAAACAAAGATCAATTACACGGAA 50
|||||||||||..|.|||.||||.||.||.|||||..|||||.|.||
RBAM_028300__ 1 ---ATGAAAAAAATTGTGCAAATCATCAAGCAGAGATCGCTTACAAGAAA 47
BSNT_04596___ 51 GCTTCTCGTTTCCTTTCTGTCGATCCTCATCATACCGGTTGTTATATTGG 100
.||.|||.||||.|||.||.|.||.|||||..|.||..||...|..||||
RBAM_028300__ 48 ACTGCTCATTTCTTTTTTGGCCATTCTCATTCTTCCTATTTCAACGTTGG 97
BSNT_04596___ 101 CGATCTTT----GCCTATCAATCGGC--TAGCAGCTCACTCGACAGACAG 144
|||| |||||||||||||| || |||.|.||.|||||.|||
RBAM_028300__ 98 ----CTTTTATCGCCTATCAATCGGCGGTA--AGCACGCTTGACAGGCAG 141
BSNT_04596___ 145 ATGATGGGGAGCGCATTGGAAAATGTACAGCA-ATTAAACGAAATCATTA 193
||||||||.||||||.|.||.|||||.||||| ||| |||||.||.||.|
RBAM_028300__ 142 ATGATGGGAAGCGCACTAGATAATGTGCAGCAGATT-AACGATATGATCA 190
BSNT_04596___ 194 ACACCAGCATCGGCGAAAAAGAAAACAGTGCTGATTATTTCAGCGAATGG 243
||||.||||||.||.||||.|||.||.|..|.|..|||||||||||.|||
RBAM_028300__ 191 ACACAAGCATCAGCCAAAAGGAAGACGGAACGGCATATTTCAGCGACTGG 240
BSNT_04596___ 244 CTGACAAAAGAGAAATACAATGC--AAAAAGCAAT-GCAAGCATTGCAGA 290
||.||.||.||...|||||| || |||||.|||| |||| |||.|.||
RBAM_028300__ 241 CTCACCAAGGATCGATACAA-GCCGAAAAACCAATCGCAA--ATTACCGA 287
BSNT_04596___ 291 GAAATTCTCACAATATATCAGCATTAACAAGGATGTAGAATCCATTTATA 340
.||||||.||.|.||.||.|..||.||.||.||.||.|||||||||||||
RBAM_028300__ 288 TAAATTCACAGAGTACATGAAGATCAATAAAGACGTGGAATCCATTTATA 337
BSNT_04596___ 341 CAAGTGACACAAAAGGGCACTTTACCCGCTATCCGGATCTTCCGATGCCA 390
|.||||||||..||||.||.||.||.||.|||||||||||.|.||||||.
RBAM_028300__ 338 CGAGTGACACGGAAGGACATTTCACACGGTATCCGGATCTGCAGATGCCT 387
BSNT_04596___ 391 AGTGGCTATAATCCGGTTGAACGCGACTGGTACAAAAAAGCGGTTGCAAA 440
|..||.|||||||||.|||||.|.||||||||.|||||.||.||.|.|||
RBAM_028300__ 388 AAAGGATATAATCCGATTGAAAGAGACTGGTATAAAAAGGCCGTGGAAAA 437
BSNT_04596___ 441 TAAAGGGAAAGTCGTGATCACAGACCCTTATAAAACCGCGTCGACAAATA 490
|||.||||||||.||..|.|||||.|||||....||.||.||.||.||||
RBAM_028300__ 438 TAAGGGGAAAGTTGTTGTAACAGATCCTTACCGCACGGCTTCCACCAATA 487
BSNT_04596___ 491 CGATGGTTGTGACAATCGCCCAGCAGACAAAAGATGGTTCAGGCGTTATC 540
|||||||.|||||..|||..||||||||||||||.||.|||||.||..||
RBAM_028300__ 488 CGATGGTCGTGACGGTCGTTCAGCAGACAAAAGACGGCTCAGGAGTCGTC 537
BSNT_04596___ 541 GCAATCAACATGACGATTGAAAATCTGCTGAAAACAACCAAAAAAGTCAA 590
||.|||||.||||..||.||..|.||.||||||||.||.||.|||||.||
RBAM_028300__ 538 GCCATCAATATGAAAATCGATGAGCTTCTGAAAACGACAAAGAAAGTGAA 587
BSNT_04596___ 591 CATCGGCACACAAGGCTACGCATTTATCATGACGAAGGACAAAAAAGTTG 640
||||||.|.|..||||||.||.||||||.|||||||.|||||||||||.|
RBAM_028300__ 588 CATCGGAAAATCAGGCTATGCTTTTATCCTGACGAAAGACAAAAAAGTGG 637
BSNT_04596___ 641 TCGCACACCCGAATGAAAAATCAGGAACTGAATTAAAAGGCGACT-GGCT 689
||||.||||||||....|.||||||.||.|.||||||.||.||.| ||||
RBAM_028300__ 638 TCGCCCACCCGAACCGCACATCAGGCACAGTATTAAACGGGGAGTGGGCT 687
BSNT_04596___ 690 CGATAAGATGTTGAGTGCTG--ATAAAGGCGATTTTCAATACACCAT-GG 736
||..||.||||.| ||.| |.|||||.||||||||||||| .|| .|
RBAM_028300__ 688 -GAACAGCTGTTCA--GCAGCAAAAAAGGTGATTTTCAATACA-AATACG 733
BSNT_04596___ 737 ATGGCGATAAGAAAAAAATGGCCTTTGACACAAACAAGTTGACGGGATGG 786
|.|||.|..|.||.||||||||.|.|||.||||||..|.||||.||.|||
RBAM_028300__ 734 ACGGCCAGGAAAAGAAAATGGCTTATGATACAAACGGGCTGACAGGCTGG 783
BSNT_04596___ 787 AAGATCGGCGGCACCATGTATTTGGATGAAATCCATGAGGCAGCCCAGCC 836
|||||...|||.||.||||||.||||.|||||.|||||.||.||||.|||
RBAM_028300__ 784 AAGATTACCGGAACAATGTATCTGGACGAAATTCATGAAGCGGCCCTGCC 833
BSNT_04596___ 837 TGTCCTTCA-----CCTTGCT--TTAATTGTCTTGGCCGCAGCTATTATC 879
..||||||| ||.|||| || .|.||.|| |||.|||.|.
RBAM_028300__ 834 GATCCTTCATCTGTCCCTGCTCGTT-CTCGTATT------AGCGATTGTG 876
BSNT_04596___ 880 ATAGGGATTATCGTCATGACTTTGATCATTCGGTCGATTACAACACCGCT 929
||.||.|..|||||||||....||||.||.||.||.||.||||.||||||
RBAM_028300__ 877 ATCGGAACCATCGTCATGGTGCTGATTATCCGTTCAATCACAAAACCGCT 926
BSNT_04596___ 930 GAAACAGCTTGTCGGTTCCTCTAAGCGGATCAGCGAGGGAGATTTGACGG 979
.||.||||||||....||.||.||.|.||||||.||.||.||.||.||.|
RBAM_028300__ 927 CAAGCAGCTTGTGACATCATCGAAACAGATCAGTGAAGGCGACTTAACAG 976
BSNT_04596___ 980 AAACCATTGATATCCGTTCAAAAGATGAATTGGGCGAGCTTGGCAAAAGC 1029
||||.||.||.||.|..||||||||||||||.||||||||||||||||||
RBAM_028300__ 977 AAACGATCGAGATTCAGTCAAAAGATGAATTAGGCGAGCTTGGCAAAAGC 1026
BSNT_04596___ 1030 TTTAACAATATG---GCTTCG-TCACTTCGTTCTCTCATACACGCCATCC 1075
|||||||||||| |||||| ||| |.||||||||.||.|||||||
RBAM_028300__ 1027 TTTAACAATATGGCCGCTTCGCTCA----GGTCTCTCATCCATGCCATCC 1072
BSNT_04596___ 1076 AGGATTCCGTAGATAATGTTGCCGCTTCCTCTGAGGAGCTCACTGCATCA 1125
||||||||||..||||.||.||..|||||||.||||||||.||.||.|||
RBAM_028300__ 1073 AGGATTCCGTGAATAACGTCGCATCTTCCTCAGAGGAGCTGACGGCTTCA 1122
BSNT_04596___ 1126 GCTGCGCAAACGAGCAAGGCAACAGAGCACATTACATTGGCGATTGAACA 1175
||.|.|||.||.|||||||||||.||.||.||.|||.|||||||.|||||
RBAM_028300__ 1123 GCGGAGCAGACAAGCAAGGCAACCGAACATATCACACTGGCGATCGAACA 1172
BSNT_04596___ 1176 ATTTTCTAACGGCAATGAAAAACAAAACGAAAACATTGAAACGGCAGCAG 1225
||||||||||||.|||||||..||||..|||||.|||||||..||.||.|
RBAM_028300__ 1173 ATTTTCTAACGGAAATGAAAGCCAAAGTGAAAATATTGAAAGCGCGGCGG 1222
BSNT_04596___ 1226 AGCACATTTATCAAATGAATGACGGG-TTGACGAATATGGCTCAAGCTTC 1274
|.||.|||||.||||||||...|||| ||.|.| |||||||..||||.||
RBAM_028300__ 1223 AACATATTTACCAAATGAACAGCGGGCTTAAAG-ATATGGCGAAAGCATC 1271
BSNT_04596___ 1275 TGAAGTGATCACTGATTCATCTGTTCA-ATCGACAGAAATTGCAAGTGAA 1323
||..||.||.||.||.||.|||| .|| |||..|.|||.|.||.|.|..|
RBAM_028300__ 1272 TGCCGTCATTACCGAATCCTCTG-CCACATCAGCGGAAGTCGCCAATTCA 1320
BSNT_04596___ 1324 GGCGGCAAGCTTGTTCATCAAACCATCGGCCAAATGAATGTCATTGACAA 1373
|||||.|||||.||.||.||.||..|||||||||||||.|||||||||..
RBAM_028300__ 1321 GGCGGAAAGCTCGTCCACCAGACGGTCGGCCAAATGAACGTCATTGACCG 1370
BSNT_04596___ 1374 GTCCGTTAAAGAAGCGGAGCAAGTCGTACGCGGATTGGAAACGAAATCGA 1423
|||.||.||||||||.||.|||||.||.||||||.|.|||||.|||||.|
RBAM_028300__ 1371 GTCAGTGAAAGAAGCTGAACAAGTGGTGCGCGGACTTGAAACAAAATCAA 1420
BSNT_04596___ 1424 AAGATATTACAAACATTTTGCGTGTGATCAACGGCATCGCAGACCAGACG 1473
||||.||||||||||||.|.|||||.||.|||||.|||||.||.|||||.
RBAM_028300__ 1421 AAGACATTACAAACATTCTCCGTGTCATTAACGGAATCGCTGATCAGACA 1470
BSNT_04596___ 1474 AACCTGCTTGCCTTAAACGCAGCAATTGAAGCAGCGCGCGCAGGCGAGTA 1523
|||||.|||||..|.|||||.|||||||||||.|||||.||.||.||.||
RBAM_028300__ 1471 AACCTTCTTGCGCTGAACGCGGCAATTGAAGCCGCGCGTGCGGGTGAATA 1520
BSNT_04596___ 1524 CGGCCGCGGCTTCTCCGTTGTAGCGGAAGAAGTAAGAAAACTGGCAGTAC 1573
||||||.||||||||.||.||.||.|||||.||.||||||||.||.||.|
RBAM_028300__ 1521 CGGCCGGGGCTTCTCAGTCGTCGCCGAAGAGGTCAGAAAACTTGCGGTCC 1570
BSNT_04596___ 1574 AGTCAGCAGATTCAGCAAAAGAGATTGAAGGATTAATCATCGAAATTGTG 1623
||||.||.||||||||.|||||.||.|||.|.|||||.||.|||||.||.
RBAM_028300__ 1571 AGTCTGCCGATTCAGCGAAAGAAATCGAAAGCTTAATTATAGAAATCGTC 1620
BSNT_04596___ 1624 AAGGAAATCAATACATCACTCGGCATGTTCCAATCTGTCAATCAAGAGGT 1673
||.||||||||||||||.|||||||||||||||||.|||||..|||||||
RBAM_028300__ 1621 AACGAAATCAATACATCTCTCGGCATGTTCCAATCCGTCAACAAAGAGGT 1670
BSNT_04596___ 1674 GCAGACAGGACTTGACATCACAGATAAAACAGAAATGAGCTTCAAACGCA 1723
|.|||..|||||.||.||.||..||.|.||.||||.||||||||||||.|
RBAM_028300__ 1671 GGAGAGCGGACTGGATATTACGAATCAGACCGAAACGAGCTTCAAACGGA 1720
BSNT_04596___ 1724 TTTCTGAAATGACGAACCAAATCGCCGGCGAACTGCAAAATATGAGTGCG 1773
|||||||||||||||||||.||||||||.|||.|.||||||||||.||||
RBAM_028300__ 1721 TTTCTGAAATGACGAACCAGATCGCCGGAGAAATTCAAAATATGAATGCG 1770
BSNT_04596___ 1774 ACGGTTCAGCAGCTTTCTGCCAG---CTCCGAAGAAGTTTCGGGAGCGTC 1820
|||||..|.|||||..|.| ||| |||.|.||| ||||.|||||.||
RBAM_028300__ 1771 ACGGTAGAACAGCTGACAG-CAGGATCTCAGCAGA--TTTCAGGAGCTTC 1817
BSNT_04596___ 1821 TGAGCACATTGCATCGATTTCAAAAGAAAGTTCAGC--GCATATACAAGA 1868
||||||.||.||.||.||..||||||||||.||.|| || ||.||.||
RBAM_028300__ 1818 TGAGCAAATCGCGTCCATCGCAAAAGAAAGCTCCGCCAGC--ATTCAGGA 1865
BSNT_04596___ 1869 TATCGCGGCGTCAGCCGAAGAGCAGCTTGCTTCCATGGAAGAAATCAGCT 1918
|||.|||||.||.||||||||.||.||.|||||.||||||||||||||.|
RBAM_028300__ 1866 TATTGCGGCCTCTGCCGAAGAACAACTGGCTTCAATGGAAGAAATCAGTT 1915
BSNT_04596___ 1919 CGTCTGCAGAGACCCTTTCGTCTATGGCGGAAGAGCTTCGCGATATGACC 1968
|||||.|.||.||..|.||....|||||||||||..|.||.||||||||.
RBAM_028300__ 1916 CGTCTTCGGAAACGTTATCCCAAATGGCGGAAGAATTACGTGATATGACG 1965
BSNT_04596___ 1969 AAACGATTCAAAATCGAATAA 1989
||||||||.|||||.||.|||
RBAM_028300__ 1966 AAACGATTTAAAATAGATTAA 1986
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