Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04582 and RBAM_028260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:02
# Commandline: needle
# -asequence dna-align/BSNT_04582___yubA.1.9828.seq
# -bsequence dna-align/RBAM_028260___yubA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04582___yubA-RBAM_028260___yubA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04582___yubA-RBAM_028260___yubA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04582___yubA
# 2: RBAM_028260___yubA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1177
# Identity: 909/1177 (77.2%)
# Similarity: 909/1177 (77.2%)
# Gaps: 26/1177 ( 2.2%)
# Score: 3472.5
#
#
#=======================================
BSNT_04582___ 1 GTGGAGACGTTGCAAACATGGAGCGGCAGATTCAAGCGATTCTTCTTGGA 50
|||||.||.||||||||||||.||||||||||.||.|..||.|||||.||
RBAM_028260__ 1 GTGGAAACATTGCAAACATGGGGCGGCAGATTTAAACAGTTTTTCTTAGA 50
BSNT_04582___ 51 CAATAAGTTTGTTTTATTTTTGCTTGTGCTGCTGCTGATTGGTTTAAATA 100
||||||.|||||.||.|||||||||||..|||||||.||.|||.|.||||
RBAM_028260__ 51 CAATAAATTTGTCTTGTTTTTGCTTGTATTGCTGCTCATCGGTCTCAATA 100
BSNT_04582___ 101 TTCTAGTATTTACAAAAACATCATTTATTTTCACCCCGATTATTGTTCTT 150
|.||.||.||||..||.|||||||||||||||||.||.|||||.||.||.
RBAM_028260__ 101 TCCTTGTCTTTATGAAGACATCATTTATTTTCACACCTATTATCGTCCTG 150
BSNT_04582___ 151 CTCAAAACGATATCACTTCCGATTATTTTGACAGGCATTGTTTTTTATCT 200
|||||||||||..|.||.||..|.|||||||||||.|||||||.||||||
RBAM_028260__ 151 CTCAAAACGATTGCGCTCCCCGTCATTTTGACAGGAATTGTTTATTATCT 200
BSNT_04582___ 201 GTTAAACCCGGTCGTCGATTTCCTTGAGAGAAGAAGAATAAGAAGAATCT 250
|.|.||.|||.||||.|||.|..|.||.|.||.||||.|.|.||||.|||
RBAM_028260__ 201 GCTTAATCCGATCGTAGATATATTGGAAAAAATAAGAGTGAAAAGAGTCT 250
BSNT_04582___ 251 ATTCTATATTGCTGCTATATCT-ATTGGTTATCGGGCTGATCACGATCAC 299
||||.||..||||.||.||.|| ||| .||||.||||||||.|||||.||
RBAM_028260__ 251 ATTCCATCCTGCTCCTTTACCTCATT-ATTATAGGGCTGATTACGATTAC 299
BSNT_04582___ 300 AATCGTGTCGATCATTCCCTTCTTAAAAGAACAAATTATGAGTTTAATCG 349
..||||.||.||.|||||.||.|||||.|||||.||.|||||..|.||||
RBAM_028260__ 300 GGTCGTTTCAATTATTCCGTTTTTAAAGGAACAGATCATGAGCCTGATCG 349
BSNT_04582___ 350 ACAACATCCCAAGATATGTGGATATCGTTGAAAATCAGACGAAACAG-CT 398
||||..|.||.|.||||||||||||.||||||.||||||||||| || ||
RBAM_028260__ 350 ACAATCTGCCGAAATATGTGGATATTGTTGAAGATCAGACGAAA-AGCCT 398
BSNT_04582___ 399 GATCGGCAGCAACTTCGTCAATCAGGCCCAGCAAACGACGAACATCAATA 448
||||||.|||.|.||.||.||||||||.||..|.||||.|||.|||||.|
RBAM_028260__ 399 GATCGGAAGCGATTTTGTAAATCAGGCGCAAAAGACGATGAATATCAACA 448
BSNT_04582___ 449 TATCTGATCTCGC-AACAAAGGTTTCAGATCAGGCAGCGACAATTGTGAA 497
|.||.|||||.|| ||.||| ||.||.|..|||||.||||||||||..||
RBAM_028260__ 449 TTTCCGATCTTGCTAATAAA-GTATCGGCGCAGGCGGCGACAATTGCAAA 497
BSNT_04582___ 498 CAGTACCTTTACCGGCGTTGGGAATTTTATCGGCGCCCTGACTGAGATTA 547
|||.||.||||||||.||.|||||||||||||||||.|||||.||..|.|
RBAM_028260__ 498 CAGCACATTTACCGGAGTCGGGAATTTTATCGGCGCGCTGACGGAAGTGA 547
BSNT_04582___ 548 TCATTTCAATCGTTACGGTTCCGTTTATCCTTTTCTATTTGTTAAAGGAC 597
|.||||||||.||.||.||.||||||||.||.|||||||||.|.||.|||
RBAM_028260__ 548 TTATTTCAATTGTGACCGTGCCGTTTATTCTGTTCTATTTGCTGAAAGAC 597
BSNT_04582___ 598 GGAAAAAAATTGCCGGTCTACATACTGAAGTTTGTTCCGACGCAATTGAA 647
||.||||||.|||||.|.||.||..|.||||||||.||.||.|...||||
RBAM_028260__ 598 GGCAAAAAACTGCCGATTTATATCTTAAAGTTTGTGCCCACCCGTCTGAA 647
BSNT_04582___ 648 AGAACAGACATACAC-AGTCTTAAGCGAAATGAATCATCGGTTAAGCTCT 696
||||||.||.||.|| |..||| ||.||||||||.||..|.||||||||.
RBAM_028260__ 648 AGAACAAACGTATACGATGCTT-AGTGAAATGAACCACAGATTAAGCTCG 696
BSNT_04582___ 697 TATATCAGAGGCCAGATCATTGTCAGCTTCTGTATCGGGTTTTTGCTGTT 746
|||||||||||.|||.||||.|||||||||||.|||||||||||..|.||
RBAM_028260__ 697 TATATCAGAGGACAGGTCATCGTCAGCTTCTGCATCGGGTTTTTATTATT 746
BSNT_04582___ 747 TATCGGTTATTTGATTATCGGGCTGGATTATGCTTCATTGCTTGCAGTCA 796
||||||.|||.||||||||||.||.||||||||.|||.|||||||.||||
RBAM_028260__ 747 TATCGGCTATCTGATTATCGGACTTGATTATGCGTCACTGCTTGCGGTCA 796
BSNT_04582___ 797 TTGCGGCTTGCACAAGCATCGTTCCATATTTAGGGCCAACGATTGCCATT 846
||||.|||||.||.|||.|.|||||.|||||||||||.||.|||||.||.
RBAM_028260__ 797 TTGCCGCTTGTACGAGCGTTGTTCCGTATTTAGGGCCGACCATTGCTATC 846
BSNT_04582___ 847 ACGCCTGCGATTATCATTGCCATAGTGACATCGCCGCTCATGCTGCTTAA 896
|||||.||||||||.||.||..|.||.||.|||||.||.||||||||.||
RBAM_028260__ 847 ACGCCGGCGATTATTATCGCGTTGGTCACTTCGCCCCTTATGCTGCTGAA 896
BSNT_04582___ 897 GCTGGTGATCGTTTGGACGATTGTTCAGCTGATTGAAGGGAAGCTGATCT 946
|||.|.|||.||.|||||..||||.|||||..|.||||||||..|.||.|
RBAM_028260__ 897 GCTTGCGATTGTATGGACCGTTGTCCAGCTCGTGGAAGGGAAATTAATTT 946
BSNT_04582___ 947 CTCCGCAAATTATGGGAAAAAACCTTCACATCCATCCGATTACGATTATT 996
|.|||||.||.|||||.|||||.||||||||.||.||||||||.||.||.
RBAM_028260__ 947 CGCCGCAGATCATGGGGAAAAATCTTCACATTCACCCGATTACCATCATC 996
BSNT_04582___ 997 TTTCTGCTGTTAACAGCCGGCAAGCTGTTCGGCGTTGTTGGAATCATTCT 1046
|||.|.||||||||.|||||.|||||||||||.|||||.||.||.|||.|
RBAM_028260__ 997 TTTGTTCTGTTAACCGCCGGAAAGCTGTTCGGGGTTGTCGGCATTATTTT 1046
BSNT_04582___ 1047 TGCGATTCCCGGCTATGCGGTTGCCAAAGTCATTACGACACATTTATTTG 1096
.||.||.||.||.||||||||...||||||..|.|||||.|||.|.||||
RBAM_028260__ 1047 AGCCATCCCGGGGTATGCGGTCATCAAAGTGGTCACGACCCATCTGTTTG 1096
BSNT_04582___ 1097 ACTGGTTTAAAATGCGGTCACATTTATACGATGAAGAAAAAAATGAAAAT 1146
|.|||||.||||||||.||.||||||||.||.|||||||||||||
RBAM_028260__ 1097 ATTGGTTCAAAATGCGTTCGCATTTATATGAAGAAGAAAAAAATG----- 1141
BSNT_04582___ 1147 ACGCCGG------GGCATAAAGTGTGA 1167
|.||.|| |.|||||
RBAM_028260__ 1142 ATGCTGGATCGAAGTCATAA------- 1161
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