Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04581 and RBAM_028250

See Amino acid alignment / Visit BSNT_04581 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:02
# Commandline: needle
#    -asequence dna-align/BSNT_04581___uppP.1.9828.seq
#    -bsequence dna-align/RBAM_028250___yubB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04581___uppP-RBAM_028250___yubB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04581___uppP-RBAM_028250___yubB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04581___uppP
# 2: RBAM_028250___yubB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 840
# Identity:     618/840 (73.6%)
# Similarity:   618/840 (73.6%)
# Gaps:          18/840 ( 2.1%)
# Score: 2189.0
# 
#
#=======================================

BSNT_04581___      1 ATGACTCTATGGGAATTGTTTGTAGCCGCCATTTTAGGAATCGTAGAAGG     50
                     |||||.||||||||..||||...|||.|||.||||.||||||||.|||||
RBAM_028250__      1 ATGACACTATGGGAGATGTTCACAGCAGCCGTTTTGGGAATCGTGGAAGG     50

BSNT_04581___     51 ATTAACAGAGTACGCGCCGGTTTCTTCGACAGGACATATGATTATAGTAG    100
                     ..|.||.||||||||||||||||||||.||.|||||||||||.||||..|
RBAM_028250__     51 GCTGACGGAGTACGCGCCGGTTTCTTCCACGGGACATATGATCATAGCGG    100

BSNT_04581___    101 ACGACATCTGGCTTAAATCAAGTAATCTGATG--TCAGAAGAAGCTGCTA    148
                     |.|||||||||||.|||||..|.|..||||||  ||.|  |||||.||.|
RBAM_028250__    101 ATGACATCTGGCTGAAATCCGGAAGCCTGATGAATCCG--GAAGCCGCCA    148

BSNT_04581___    149 ACTCATTCAAGGTGGTTATTCAGCTAGGCTCCATTTTAGCAGTAGCTATC    198
                     |.||.|||||.|||||.||||||||.||.||.|||.|.||.||.||.||.
RBAM_028250__    149 ATTCCTTCAAAGTGGTGATTCAGCTCGGTTCGATTCTGGCGGTGGCCATT    198

BSNT_04581___    199 GTGTTTAAAGACCGAATTTTAAATTTACTGGGCTTGAAAAAAAATATTAC    248
                     ||||||||.||.||.||.|||.|||||||.|||.|.||||||||..|.||
RBAM_028250__    199 GTGTTTAAGGATCGGATATTACATTTACTCGGCCTCAAAAAAAACGTCAC    248

BSNT_04581___    249 AAGCGACCAGGAGCAGGGACATAAATTAAGCATTGCCCAAATTGCCGTCG    298
                     ..||||.|||.||.|||||.|.|...|.|.|||.||.|||||.|||||||
RBAM_028250__    249 GCGCGATCAGCAGAAGGGATACAGGCTGACCATCGCGCAAATCGCCGTCG    298

BSNT_04581___    299 GACTCGTGCCTGCAGCTGTTCTCGGCTTTTTGTTTGAAGATTACATTGAT    348
                     |.||.||.||.||.||.||.|||||||||||.|||||.||||.||||||.
RBAM_028250__    299 GTCTTGTTCCGGCGGCGGTGCTCGGCTTTTTATTTGAGGATTTCATTGAC    348

BSNT_04581___    349 GAATATTTATTTTCCGTTAAAACTGTGGCCATCGGTTTAATTGCCGGGGC    398
                     ...||||||||.|||||.|.|||.||.||...|||.|||||||||||.||
RBAM_028250__    349 CGCTATTTATTCTCCGTCAGAACGGTCGCTTACGGATTAATTGCCGGAGC    398

BSNT_04581___    399 AATCCTCATGCTTTTTGCTGACTGGGTCAATAAACGGAAAACAGCGACAG    448
                     ..|.||.||||||.|.||.||||||.||||||||.|||||..|.|||..|
RBAM_028250__    399 CGTGCTTATGCTTATAGCGGACTGGATCAATAAAAGGAAAGAAACGATCG    448

BSNT_04581___    449 ACACACTCGACCGCATTTCCTATAAACAGGCGATAGCCGTCGGCTTATTC    498
                     |.||..|.|||.|.||..||||.||||||||..|....|||||.||||||
RBAM_028250__    449 ATACGGTAGACAGAATCACCTACAAACAGGCTTTCTGTGTCGGATTATTC    498

BSNT_04581___    499 CAATGTCTTGCCCTTTGGCCGGGTTTCTCGCGTTCTGGTTCAACCATATC    548
                     ||.|||||.|||.|.|||||.||.||.||.||.||.||.|||||.||..|
RBAM_028250__    499 CAGTGTCTCGCCTTATGGCCCGGATTTTCCCGCTCAGGCTCAACGATTGC    548

BSNT_04581___    549 CGGAGGTGTTATTCTCGGATTAAACCACCGAGCTGCAGCCGACTTTACGT    598
                     |||||||||.|||.||||.||.||.|||||.||.||.||.|||||.||.|
RBAM_028250__    549 CGGAGGTGTCATTGTCGGCTTGAATCACCGGGCAGCCGCAGACTTCACCT    598

BSNT_04581___    599 TTATTATGGCGATGCCGATCATGATGGGAGCCAGCTTTCT-AAGCCTCGT    647
                     ||||||||||.||.|||||.|||..|||.||.|||.|||| ||| ||.||
RBAM_028250__    599 TTATTATGGCTATTCCGATTATGGCGGGCGCAAGCCTTCTGAAG-CTGGT    647

BSNT_04581___    648 GAAGCATTGGGACAG-----CTTAAGCTCGGATCTGATGCCATTTTTCAT    692
                     |||..|.|||..|||     ||||     .||..||||.||.|||||..|
RBAM_028250__    648 GAAATACTGGAGCAGTCTTTCTTA-----TGACATGATTCCGTTTTTTCT    692

BSNT_04581___    693 CGTCGGCTTTATCTGTGCCTTTGTTGTCGCACTGTTTGTCGTC-CGTTTC    741
                     .||||||||||||||.||||||||.|||||.||.||.|||||| ..|||.
RBAM_028250__    693 AGTCGGCTTTATCTGCGCCTTTGTCGTCGCCCTCTTAGTCGTCAAATTTT    742

BSNT_04581___    742 TTCTTAAGGCTGATTAACAAAATCAAACTTGTCCCATTTGCAATCTATCG    791
                     ||||| .||||.||||||...||.||.||||||||.||.||.||.||.||
RBAM_028250__    743 TTCTT-CGGCTCATTAACCGGATTAAGCTTGTCCCGTTCGCCATTTACCG    791

BSNT_04581___    792 AATTATTCTCGGTGTGATTTTACTTTTGATCATGATGTAA    831
                     ..|.||.|||||..|.||||||.|..||.||.||...|||
RBAM_028250__    792 TGTCATCCTCGGCATCATTTTAATCATGCTCGTGCGATAA    831


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