Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04561 and RBAM_028130

See Amino acid alignment / Visit BSNT_04561 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:01
# Commandline: needle
#    -asequence dna-align/BSNT_04561___yuaE.1.9828.seq
#    -bsequence dna-align/RBAM_028130___yuaE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04561___yuaE-RBAM_028130___yuaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04561___yuaE-RBAM_028130___yuaE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04561___yuaE
# 2: RBAM_028130___yuaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 518
# Identity:     354/518 (68.3%)
# Similarity:   354/518 (68.3%)
# Gaps:          55/518 (10.6%)
# Score: 1194.5
# 
#
#=======================================

BSNT_04561___      1 ATGATGAGTATCTTTAATGAAGCCAGATTAG-AAACGTGGAACGAATTGA     49
                        |||||.||.||||||||||||||| .|| |.|..|||.|.|||.|||
RBAM_028130__      1 ---ATGAGCATTTTTAATGAAGCCAGA-CAGCAGATCTGGGAAGAACTGA     46

BSNT_04561___     50 AAGGACTTTCTGACGAAAAGCTGAATCAAAAGCCTTCTGCTGAAGAATGG     99
                     |||||||.|||||.||..|..|.||.|.||||||..|.|||||.||.|||
RBAM_028130__     47 AAGGACTCTCTGATGAGGAATTCAACCGAAAGCCCGCGGCTGATGAGTGG     96

BSNT_04561___    100 AGCATACGGGAAGTTCTTGACCATTTGAAAAAAATCGATATGAC------    143
                     |||.|.||||||||.|||||||||||.||.|||||     ||||      
RBAM_028130__     97 AGCGTGCGGGAAGTCCTTGACCATTTAAAGAAAAT-----TGACGAAACA    141

BSNT_04561___    144 -CGCA-----------CAAAAAATGTTGAAGGAACGTGTAAAGGACGCTC    181
                      ||||           ||||       |.||      |.|||.|||||.|
RBAM_028130__    142 GCGCAGACCCTTTTATCAAA-------GCAG------GCAAAAGACGCAC    178

BSNT_04561___    182 CGATTAAAGAAATTGAAGAAAAATCGCTTGAGGTCGCACAGGACAGAAAT    231
                     ||.|.||||||||.|||||||||.||.|.|||.|...|.|||||||||..
RBAM_028130__    179 CGTTAAAAGAAATAGAAGAAAAACCGATGGAGTTTATAGAGGACAGAACA    228

BSNT_04561___    232 AATAAACGGAAAGCCCCGAGTCATCTTGAGCCTGCGCA----TGATTTTA    277
                     .||||||||...||.|||...||.||.||.||||.|||    .||    |
RBAM_028130__    229 GATAAACGGCCGGCGCCGTCACACCTCGAACCTGAGCAAAACCGA----A    274

BSNT_04561___    278 TTTCAGGCAGCCAAATGAAACGTGAGCTTGATGTGGTAAGAGAGCAGCTG    327
                     |.||||.||...||...||||..||..|.|||..||.||||.||||||||
RBAM_028130__    275 TATCAGTCATTGAAGCAAAACAAGAATTAGATACGGCAAGACAGCAGCTG    324

BSNT_04561___    328 ACTGCTGCGATTGCCTCTCTGAAAGAAGAAGATTTTGAAAGAGTGCTTCC    377
                     ||.||.|..|||.|.||..|.||.||.|||||.||||||.|.||||||||
RBAM_028130__    325 ACCGCAGTTATTTCATCATTAAACGAGGAAGACTTTGAACGTGTGCTTCC    374

BSNT_04561___    378 GCATCCTGTGTTTCAAGAGCTGACTGTCAGACAGTGGATCGATTTTATCG    427
                     |||||||||.|||||.||.|||.|..||.|.||||||||.||||||||||
RBAM_028130__    375 GCATCCTGTTTTTCAGGAACTGGCGATCCGCCAGTGGATTGATTTTATCG    424

BSNT_04561___    428 GCCATCATGAAAAACGGCACCTCAGCCAAATGAAAGAAATTAAAGAAAAG    477
                     |||||||||||||.||.|||.|.|..|||||.||||||||.|||.||||.
RBAM_028130__    425 GCCATCATGAAAAGCGTCACATTAATCAAATAAAAGAAATCAAACAAAAA    474

BSNT_04561___    478 AT--AGAAAGGGCCTGA-    492
                     ||  ||||  ||.|| | 
RBAM_028130__    475 ATCAAGAA--GGTCT-AG    489


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