Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04560 and RBAM_028120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:00
# Commandline: needle
# -asequence dna-align/BSNT_04560___yuaF.1.9828.seq
# -bsequence dna-align/RBAM_028120___yuaF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04560___yuaF-RBAM_028120___yuaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04560___yuaF-RBAM_028120___yuaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04560___yuaF
# 2: RBAM_028120___yuaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 596
# Identity: 372/596 (62.4%)
# Similarity: 372/596 (62.4%)
# Gaps: 85/596 (14.3%)
# Score: 1125.5
#
#
#=======================================
BSNT_04560___ 1 ATGGTAACGGCGGCCGTTCATCAATGCATTGATGAAGAAAGGATGAGGAA 50
RBAM_028120__ 0 -------------------------------------------------- 0
BSNT_04560___ 51 ATTGGAGTTATTTGGAGTACCTATACAAACAATTTATCTTTATACGCTTA 100
.||||..|||||....|.||..|..||||..|.||||||||.||..|.|
RBAM_028120__ 1 -ATGGACATATTTCATCTGCCGCTTGAAACGGTCTATCTTTACACATTGA 49
BSNT_04560___ 101 TTATTGCGGGCAGCCTTACGCTGTT-ATTCCTGTTTTTCGGAGATGTATT 149
|||||.||||.||.||.|||||.|| ||| ||||||||...||||||.||
RBAM_028120__ 50 TTATTTCGGGAAGTCTCACGCTTTTGATT-CTGTTTTTTCAAGATGTGTT 98
BSNT_04560___ 150 TGCA-GGGCTGTCAGAAGGCATTCC-GTTTC----TTAATCC--GACATT 191
| || ||.||.||.||||.|||||| ||||| ||||.|| | ||||
RBAM_028120__ 99 T-CACGGCCTCTCGGAAGCCATTCCTGTTTCATTTTTAAACCCTG-CATT 146
BSNT_04560___ 192 AGTGCTCTCATTTTTCACATGTTTTTCAGCGGGCGGATATATAGGTGAAC 241
..|.||.||.|||||.|||...||||||||....||.|||||.||.|||.
RBAM_028120__ 147 GATTCTGTCTTTTTTAACAATCTTTTCAGCCTCAGGTTATATCGGCGAAA 196
BSNT_04560___ 242 TCG----TATTGCCTCTGTCAAGCTTGCTG--ATTGC---GCTTTTATCT 282
||| | ||.||.||||| |.||| ||||| |||||.|| |
RBAM_028120__ 197 TCGCCGCT----CCGCTATCAAG--TTCTGTCATTGCGTTGCTTTCAT-T 239
BSNT_04560___ 283 TGCATCCTTTCGATCATGCTGGTGGTATTGCTTCACATCTTTGTGCTGGT 332
|| |.||||||.|..|..||||.....||||||||.||||.||.||.||
RBAM_028120__ 240 TG--TTCTTTCGGTTCTTTTGGTCAGCCTGCTTCACTTCTTCGTCCTTGT 287
BSNT_04560___ 333 GCCATTATCATCTGCAGAAGAATCATTGGCATAT--AGAGAAGATGATCT 380
.||..|.|||||.||.||||||||..|.||.||| .||||.| |||.|
RBAM_028120__ 288 CCCGCTTTCATCAGCGGAAGAATCGCTCGCTTATCGGGAGACG--GATTT 335
BSNT_04560___ 381 CAGAGGAAGACTCGGTAAAGTGATTACAGCTGTGCCGGTTGACGGATTTG 430
.|..||.|||.||||.|..||.|||||..|.||.|||...|||||.|.||
RBAM_028120__ 336 AAAGGGCAGAGTCGGCAGGGTCATTACTTCCGTCCCGAAAGACGGCTATG 385
BSNT_04560___ 431 GTGAAGTGGTCATAGAAGGGATAGGCGGGACCATTTCAAAGTCAGCGGTC 480
|.||||||.|||||||.||.|||||.||..|||||||.||.|||||.|||
RBAM_028120__ 386 GAGAAGTGATCATAGAGGGAATAGGGGGCGCCATTTCTAAATCAGCCGTC 435
BSNT_04560___ 481 AGTTTTGATAATCAGCAGATCAGTTACGGGACAACGGTGTTAGTCGTAGA 530
||.||||||.|..|.|||||||..|||||.||..|.||.|||||..|.||
RBAM_028120__ 436 AGCTTTGATCAAGAACAGATCAAGTACGGAACGGCCGTATTAGTGATTGA 485
BSNT_04560___ 531 TATTAACAACGGAGTTCTTTCGGTTACTCCGCATGAACCCATTTAA 576
..|.||..|||||||.||||..||.||.||||||||||..||.|.|
RBAM_028120__ 486 CGTGAAAGACGGAGTGCTTTTTGTGACGCCGCATGAACTAATCTGA 531
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