Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04560 and RBAM_028120

See Amino acid alignment / Visit BSNT_04560 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:00
# Commandline: needle
#    -asequence dna-align/BSNT_04560___yuaF.1.9828.seq
#    -bsequence dna-align/RBAM_028120___yuaF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04560___yuaF-RBAM_028120___yuaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04560___yuaF-RBAM_028120___yuaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04560___yuaF
# 2: RBAM_028120___yuaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 596
# Identity:     372/596 (62.4%)
# Similarity:   372/596 (62.4%)
# Gaps:          85/596 (14.3%)
# Score: 1125.5
# 
#
#=======================================

BSNT_04560___      1 ATGGTAACGGCGGCCGTTCATCAATGCATTGATGAAGAAAGGATGAGGAA     50
                                                                       
RBAM_028120__      0 --------------------------------------------------      0

BSNT_04560___     51 ATTGGAGTTATTTGGAGTACCTATACAAACAATTTATCTTTATACGCTTA    100
                      .||||..|||||....|.||..|..||||..|.||||||||.||..|.|
RBAM_028120__      1 -ATGGACATATTTCATCTGCCGCTTGAAACGGTCTATCTTTACACATTGA     49

BSNT_04560___    101 TTATTGCGGGCAGCCTTACGCTGTT-ATTCCTGTTTTTCGGAGATGTATT    149
                     |||||.||||.||.||.|||||.|| ||| ||||||||...||||||.||
RBAM_028120__     50 TTATTTCGGGAAGTCTCACGCTTTTGATT-CTGTTTTTTCAAGATGTGTT     98

BSNT_04560___    150 TGCA-GGGCTGTCAGAAGGCATTCC-GTTTC----TTAATCC--GACATT    191
                     | || ||.||.||.||||.|||||| |||||    ||||.||  | ||||
RBAM_028120__     99 T-CACGGCCTCTCGGAAGCCATTCCTGTTTCATTTTTAAACCCTG-CATT    146

BSNT_04560___    192 AGTGCTCTCATTTTTCACATGTTTTTCAGCGGGCGGATATATAGGTGAAC    241
                     ..|.||.||.|||||.|||...||||||||....||.|||||.||.|||.
RBAM_028120__    147 GATTCTGTCTTTTTTAACAATCTTTTCAGCCTCAGGTTATATCGGCGAAA    196

BSNT_04560___    242 TCG----TATTGCCTCTGTCAAGCTTGCTG--ATTGC---GCTTTTATCT    282
                     |||    |    ||.||.|||||  |.|||  |||||   |||||.|| |
RBAM_028120__    197 TCGCCGCT----CCGCTATCAAG--TTCTGTCATTGCGTTGCTTTCAT-T    239

BSNT_04560___    283 TGCATCCTTTCGATCATGCTGGTGGTATTGCTTCACATCTTTGTGCTGGT    332
                     ||  |.||||||.|..|..||||.....||||||||.||||.||.||.||
RBAM_028120__    240 TG--TTCTTTCGGTTCTTTTGGTCAGCCTGCTTCACTTCTTCGTCCTTGT    287

BSNT_04560___    333 GCCATTATCATCTGCAGAAGAATCATTGGCATAT--AGAGAAGATGATCT    380
                     .||..|.|||||.||.||||||||..|.||.|||  .||||.|  |||.|
RBAM_028120__    288 CCCGCTTTCATCAGCGGAAGAATCGCTCGCTTATCGGGAGACG--GATTT    335

BSNT_04560___    381 CAGAGGAAGACTCGGTAAAGTGATTACAGCTGTGCCGGTTGACGGATTTG    430
                     .|..||.|||.||||.|..||.|||||..|.||.|||...|||||.|.||
RBAM_028120__    336 AAAGGGCAGAGTCGGCAGGGTCATTACTTCCGTCCCGAAAGACGGCTATG    385

BSNT_04560___    431 GTGAAGTGGTCATAGAAGGGATAGGCGGGACCATTTCAAAGTCAGCGGTC    480
                     |.||||||.|||||||.||.|||||.||..|||||||.||.|||||.|||
RBAM_028120__    386 GAGAAGTGATCATAGAGGGAATAGGGGGCGCCATTTCTAAATCAGCCGTC    435

BSNT_04560___    481 AGTTTTGATAATCAGCAGATCAGTTACGGGACAACGGTGTTAGTCGTAGA    530
                     ||.||||||.|..|.|||||||..|||||.||..|.||.|||||..|.||
RBAM_028120__    436 AGCTTTGATCAAGAACAGATCAAGTACGGAACGGCCGTATTAGTGATTGA    485

BSNT_04560___    531 TATTAACAACGGAGTTCTTTCGGTTACTCCGCATGAACCCATTTAA    576
                     ..|.||..|||||||.||||..||.||.||||||||||..||.|.|
RBAM_028120__    486 CGTGAAAGACGGAGTGCTTTTTGTGACGCCGCATGAACTAATCTGA    531


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