Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04557 and RBAM_028100

See Amino acid alignment / Visit BSNT_04557 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:00
# Commandline: needle
#    -asequence dna-align/BSNT_04557___yuaJ.1.9828.seq
#    -bsequence dna-align/RBAM_028100___yuaJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04557___yuaJ-RBAM_028100___yuaJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04557___yuaJ-RBAM_028100___yuaJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04557___yuaJ
# 2: RBAM_028100___yuaJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 599
# Identity:     432/599 (72.1%)
# Similarity:   432/599 (72.1%)
# Gaps:          37/599 ( 6.2%)
# Score: 1530.0
# 
#
#=======================================

BSNT_04557___      1 ATGAATCAATCTAAGCAACTGGTTCGCCTTATTGAAATTGCCATTATGAC     50
                     ||||||||.||.|..|..||.||.|||.|.||||||||.||.||||||||
RBAM_028100__      1 ATGAATCATTCAACACGGCTTGTGCGCTTAATTGAAATAGCGATTATGAC     50

BSNT_04557___     51 AGCGGCAGCCGTTATTTTAGACATTGTCTCAGGAATGTTTCTTAGCATGC    100
                     .|.|||.||.||.|||.|.||||||||||||||.||||||||..|.||||
RBAM_028100__     51 CGGGGCGGCTGTCATTCTGGACATTGTCTCAGGTATGTTTCTCCGGATGC    100

BSNT_04557___    101 CTCAAGGAGGCTCGGTCTCCATCATGATGATTCCGATCTTTTTAATTTCG    150
                     |.|||||.||.||||||||.||.||||||||||||||.|||||.|||||.
RBAM_028100__    101 CCCAAGGCGGTTCGGTCTCTATTATGATGATTCCGATTTTTTTGATTTCA    150

BSNT_04557___    151 TTTCGCTGGGGTGTCAAAGCAGGTCTTACTACAGGTTTGTTGACAGGTCT    200
                     ||.||||||||.||.|||||.||.|||||.|||||.||.||||||||..|
RBAM_028100__    151 TTCCGCTGGGGAGTGAAAGCCGGGCTTACGACAGGCTTTTTGACAGGGAT    200

BSNT_04557___    201 AGTACAAATAGCAATCGGAAACTTGTTTGCTCAACATCCTGTACAGCTAT    250
                     .||.||.||.||.|||||.||.||||||...||.||.||.||.|||||||
RBAM_028100__    201 TGTCCAGATCGCCATCGGCAATTTGTTTTTGCAGCACCCGGTGCAGCTAT    250

BSNT_04557___    251 TGTTAGATTACATTGTCGCTTTCGCAGCAATCGGCATAAGCGGC-TGTTT    299
                     |..|.||||||||.|..||.||.||||...||||..|.||.||| |||||
RBAM_028100__    251 TTCTTGATTACATCGCGGCCTTTGCAGTTCTCGGTTTCAGTGGCTTGTTT    300

BSNT_04557___    300 CGCTTCTTCTGTCCGTAAAGCCGC--TGTATCAAAAACAAAAGG------    341
                      |||||...|||.||..||.|.||  ||.||  ||||.||.|||      
RBAM_028100__    301 -GCTTCCGGTGTACGGGAATCGGCATTGAAT--AAAAAAAGAGGCGCTTT    347

BSNT_04557___    342 ---GAAATTGATTGTTTCAGTGGTCAGCGCAGTTTTTATCGGCAGTTTGC    388
                        ||   ||..||||..||      |||..|||||.|||||||||.|||
RBAM_028100__    348 AACGA---TGTATGTTATAG------GCGGTGTTTTCATCGGCAGTGTGC    388

BSNT_04557___    389 TGCGCTATGCCGCGCATGTCATTTCAGGAGCTGTGTTTTTCGGCAGCTTT    438
                     ||||||||||.||.|||||..|.||.||||||||.||||||||.||||.|
RBAM_028100__    389 TGCGCTATGCGGCACATGTGGTCTCCGGAGCTGTCTTTTTCGGAAGCTAT    438

BSNT_04557___    439 GCTCCAAAAGGAACACCGGTATGGATTTATTCTTTAACTTATAATGCGAC    488
                     |||||.||.||.||.|||||||||||||||||.|.....|||||.|||||
RBAM_028100__    439 GCTCCGAAGGGCACGCCGGTATGGATTTATTCGTCCGTCTATAACGCGAC    488

BSNT_04557___    489 TTACATGGTTCCTTCATTCATTATTTGTGCAATTGTCC-TATGTTTATTA    537
                     |||.|||.|||||||.||.||..|||..||.||||||| ||| .||||||
RBAM_028100__    489 TTATATGATTCCTTCTTTTATCCTTTCGGCCATTGTCCTTAT-CTTATTA    537

BSNT_04557___    538 TTTATGACAGCACCCCGTCTGCTTAAAAGTGACAAAGCGTAA-------    579
                     ||.|||||.||.||.||.||.|||.||    .|.|||||.|.       
RBAM_028100__    538 TTCATGACTGCGCCGCGGCTTCTTGAA----GCTAAGCGGACGAACTGA    582


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