Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04486 and RBAM_027810
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:59
# Commandline: needle
# -asequence dna-align/BSNT_04486___menF.1.9828.seq
# -bsequence dna-align/RBAM_027810___menF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04486___menF-RBAM_027810___menF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04486___menF-RBAM_027810___menF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04486___menF
# 2: RBAM_027810___menF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1533
# Identity: 1062/1533 (69.3%)
# Similarity: 1062/1533 (69.3%)
# Gaps: 189/1533 (12.3%)
# Score: 3682.5
#
#
#=======================================
BSNT_04486___ 1 GTGTATGGTATTAAAAGCATTTTAAGGATTATGGAGGAATGTCTCATGGT 50
|||||
RBAM_027810__ 1 ---------------------------------------------ATGGT 5
BSNT_04486___ 51 GACAACGGTGCAGCGTACGTTCCGAAAGGAAG----TTCTACATGCATTA 96
||||||||||||||.||||||||||.|||||| | |||||||||
RBAM_027810__ 6 GACAACGGTGCAGCATACGTTCCGAGAGGAAGCAGAT----CATGCATTA 51
BSNT_04486___ 97 CATAAAGCCAAAGAAGTCAACCATGCTGTCTTAATAAGCTATTCGAGACA 146
||||||||||||.||||||||||||||||||||.|.||||||||.||||.
RBAM_027810__ 52 CATAAAGCCAAACAAGTCAACCATGCTGTCTTATTGAGCTATTCAAGACG 101
BSNT_04486___ 147 AATCGAGTCTCTTGACCCTCTATCATTTTTCAATTACGGAGCAAAAAAAT 196
.||.|.||||.|.||||||||||||||||||||..|||||||||||||||
RBAM_027810__ 102 TATTGCGTCTTTAGACCCTCTATCATTTTTCAAAGACGGAGCAAAAAAAT 151
BSNT_04486___ 197 ATACAGGCAATCGATTTTTTTGGTCAGATCCTGAAAGTGAATTGACAATA 246
|||.||||||.|||||||||||||||||.||.|..||||||||.||||||
RBAM_027810__ 152 ATAAAGGCAAACGATTTTTTTGGTCAGAACCCGGTAGTGAATTAACAATA 201
BSNT_04486___ 247 GTCGGTCTTGGCAAAGAAGCGGTTTTCCAGACAAATCAAAAAAACAGCGA 296
|||||||||||||.|||||||.|.|||||..|.|||.|||||||..|..|
RBAM_027810__ 202 GTCGGTCTTGGCACAGAAGCGCTGTTCCAATCGAATGAAAAAAATGGAAA 251
BSNT_04486___ 297 GCGGTATCGTGAGGTTTTTGAACAATGGGAGCGCTTTAAAAAGACGGCTT 346
|||.||||..||.|||||||||||||||||||||||||||||||||||||
RBAM_027810__ 252 GCGTTATCACGACGTTTTTGAACAATGGGAGCGCTTTAAAAAGACGGCTT 301
BSNT_04486___ 347 TTCATATTTATGAAGAAGAA-AAGCTGCAGCATTCTGCAGTGGGACCTGT 395
||||||||.||||||||||| |.||.|| ||||.|.||.||.||.|||||
RBAM_027810__ 302 TTCATATTCATGAAGAAGAAGAGGCGGC-GCATACCGCGGTCGGCCCTGT 350
BSNT_04486___ 396 GTTATTCGGAGGATTTTCTTTTGA-CCCTTGC-GAAGAAAGAGGTTCAC- 442
.||||||||.||.|||||.|||.| ||| || |||||.||||| ..||
RBAM_027810__ 351 CTTATTCGGCGGTTTTTCATTTAATCCC--GCTGAAGAGAGAGG-AGACG 397
BSNT_04486___ 443 AATGGGACCATTTCTCGGAAGGGGATTTCTTTGTGCCTGCGCTTATGCTG 492
|||||.||...|||...|||||....||||||.|.||..|.||.||||||
RBAM_027810__ 398 AATGGAACGGGTTCGAAGAAGGACTGTTCTTTATCCCCTCACTCATGCTG 447
BSNT_04486___ 493 ACGATGACTGCTGAAGGCCCGTTCTTAACAGTTAA-CAGATGGGTAAGCG 541
||.|.|||.||.||.||....|..|||||.||.|| || |||| |||
RBAM_027810__ 448 ACAAAGACGGCAGATGGTGATTATTTAACCGTCAATCA-ATGG----GCG 492
BSNT_04486___ 542 GAGGAGAAGAC---------GCAGAAGCTGTTTTAGAAGGCTTAAAAGCT 582
|.|||| |||||||.|....||.||.|..|.|||.||
RBAM_027810__ 493 -----GCAGACGGTAATCTGGCAGAAGATACGCTAAAACGTCTGAAATCT 537
BSNT_04486___ 583 TTTGCGGCGGAA----TTTATGGTTCCTGATTTCAAGC-------AAGAA 621
||| .||||| |||..|.||| |||||.| |||||
RBAM_027810__ 538 TTT---TCGGAAGCTTTTTCAGTTTC-----TTCAATCGAGTATGAAGAA 579
BSNT_04486___ 622 GATCAGGCTGTGATTGCAGCAGCCGAAGAGCTGGATAAGGATGATTGGCT 671
.||| ||||..|..||..|||.|||||.||.|||..|||..|.|||||
RBAM_027810__ 580 TATC---CTGTTTTAACAAAAGCGGAAGAACTTGATGTGGAAAACTGGCT 626
BSNT_04486___ 672 GAAAGCAATCGAAACGGCCACAAGCCAA----ATTAAAGAGAAACAATAT 717
..||||.||..||||.||.||| || ||.||||..||.||||||
RBAM_027810__ 627 TGAAGCCATTAAAACAGCAACA----AATGGTATGAAAGCAAATCAATAT 672
BSNT_04486___ 718 GATAAGGTTGTTCTTGCCCGAGAGCTGCTGCTCACGTT--------TGAC 759
|||||.||.||.||.||..|.||..| |||| |||.
RBAM_027810__ 673 GATAAAGTCGTGCTGGCAAGGGAAGT--------CGTTTTGTCATATGAT 714
BSNT_04486___ 760 GGTCCAATCCAAATTGA-ACCG--GTGCTTAAAACGCTTCTGGAC-GATC 805
||.||.||.|.....|| |.|| ||.|.||| |||| |.||| ||.|
RBAM_027810__ 715 GGGCCTATTCCGGCGGAGAGCGTTGTCCGTAA---GCTT-TTGACGGACC 760
BSNT_04486___ 806 AGCAGACAAGCTATGTTTTTGCAATTGAACAAGAAGGCAAAACCTTTGTC 855
|...||||||||||||||||||.|||||.||.|.||..|||..|||||||
RBAM_027810__ 761 AAACGACAAGCTATGTTTTTGCGATTGAGCAGGGAGATAAATGCTTTGTC 810
BSNT_04486___ 856 GGCGCGTCTCCGGAAAGACTGATCAAAAGAGACGGC---GGCACTGTCAT 902
|||||.||.||||||.|.||||||||||.|..|||| |.| |||||
RBAM_027810__ 811 GGCGCTTCACCGGAACGGCTGATCAAAAAATCCGGCAAAGAC---GTCAT 857
BSNT_04486___ 903 GTCTTCCTGTCTGGCAGGCTCCATTAAACGAGGCGTGAAT---GAAGAAG 949
|||..|||||||||||||.||.|||||.||.||.|..||| .||||||
RBAM_027810__ 858 GTCCACCTGTCTGGCAGGTTCAATTAAGCGCGGAGAAAATCAACAAGAAG 907
BSNT_04486___ 950 ACGACCG---CCGGATAGGCCT--TGAATTATTAAACGATGAGAAAAACC 994
|.||.|| |.|.|.||..|| ||.|| ||.||.|||||.|
RBAM_027810__ 908 ATGAGCGTCTCGGCAAAGAGCTGCTGCAT--------GACGAAAAAAATC 949
BSNT_04486___ 995 T-GCTTGAGCATGATATTGTGGT--AGGTATGATTCATAATGCTTTTGTA 1041
| || .||.||||||.||||||| || |||||.||..||.||||..|.
RBAM_027810__ 950 TCGC-GGAACATGATTTTGTGGTTCAG--ATGATACACGATTCTTTCTTG 996
BSNT_04486___ 1042 TCAAGCTGTTCA--GAGGTTGAAAAGCCTGATGGACCTGTTTTGTACAAA 1089
||.||||| || ||.||..|||||||||..||.||....||.||.|||
RBAM_027810__ 997 TCGAGCTG--CAGCGATGTGAAAAAGCCTGCAGGTCCGCAATTATATAAA 1044
BSNT_04486___ 1090 ACAAAAAGCGTTCAGCACCTGTTTACGCCGATTGTCGGACAGCTGCGCGA 1139
||.|||||.||||||||.||.|.|||.||||| .|||| ||.|
RBAM_027810__ 1045 ACGAAAAGTGTTCAGCATCTATATACACCGAT-----CACAG----GCCA 1085
BSNT_04486___ 1140 ---------GTCTGCTTCAATTTTTGACTTAATTGAGAAGCTGCATCCCA 1180
|||.||||||.|.|||||.||||||||.|||||||||||||
RBAM_027810__ 1086 TCTTAAAACGTCCGCTTCACTGTTTGATTTAATTGAAAAGCTGCATCCCA 1135
BSNT_04486___ 1181 CTCCGGCGCTCGGGGGAGCACCTCAGGAAAAAGCTGTTGACGTGATCAGG 1230
|.|||||..|.||.|||.|.||.|||.|.|||||||||||.||.|||...
RBAM_027810__ 1136 CACCGGCATTGGGCGGATCTCCCCAGCAGAAAGCTGTTGAAGTTATCGCT 1185
BSNT_04486___ 1231 GAGATTGAACCGATGTCTCGCGGCTGGTATGCTGCCCCTATCGGCTGGAT 1280
||.||||||||||||.|.|||||.|||||.||.||.||.|||||||||||
RBAM_027810__ 1186 GATATTGAACCGATGACACGCGGATGGTACGCGGCACCGATCGGCTGGAT 1235
BSNT_04486___ 1281 TGACAGCCAGGATAACGGGGAATTCGCGGTAGCCATTCGTTCAGGGCTGA 1330
.|||.||..|||.|||||.|||||.|..||.||.||.||.||||||||||
RBAM_027810__ 1236 GGACGGCAGGGAAAACGGAGAATTTGTCGTGGCTATCCGATCAGGGCTGA 1285
BSNT_04486___ 1331 TCGAAGGAAGCACTGCAAGGCTGTTTGCCGGGTGCGGTATTGTGGAAGAC 1380
|.|||||.|..|.|||..||||.||.||.||.|||||||||||.|||||.
RBAM_027810__ 1286 TTGAAGGCAAAAGTGCGCGGCTTTTCGCAGGCTGCGGTATTGTTGAAGAT 1335
BSNT_04486___ 1381 TCGGAAC--CAATCTCGGAATATGAAGAAACACAGATTAAATTGAAGCCG 1428
||.||.| ||| ||.|||||||||||||||||.||||||.|.||||||
RBAM_027810__ 1336 TCAGATCCGCAA--TCAGAATATGAAGAAACACAAATTAAACTAAAGCCG 1383
BSNT_04486___ 1429 ATGATCTCTGCATTAGGAGGTGAGAGGCGTTGA 1461
|||||||||||.|||||||||||.||||.||||
RBAM_027810__ 1384 ATGATCTCTGCTTTAGGAGGTGAAAGGCTTTGA 1416
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