Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04467 and RBAM_027700
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:58
# Commandline: needle
# -asequence dna-align/BSNT_04467___ytiB.1.9828.seq
# -bsequence dna-align/RBAM_027700___ytiB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04467___ytiB-RBAM_027700___ytiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04467___ytiB-RBAM_027700___ytiB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04467___ytiB
# 2: RBAM_027700___ytiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 578
# Identity: 446/578 (77.2%)
# Similarity: 446/578 (77.2%)
# Gaps: 22/578 ( 3.8%)
# Score: 1693.5
#
#
#=======================================
BSNT_04467___ 1 ATGAGTCTTCTAAATGATATTCTTG-AATTTAACAAGACA-TTTACTGAA 48
||||||||||||||.|||| ||.|| |||||||..|| || ||.|||.||
RBAM_027700__ 1 ATGAGTCTTCTAAACGATA-TCATGCAATTTAATGAG-CAGTTCACTAAA 48
BSNT_04467___ 49 CAAAGAGAGTATGAAAAGTATCAAACATCAAAATTTCCAGATAAAAAAAT 98
.|.|.|||.||||||||.||.||||||||.|||||.||.|||||||||||
RBAM_027700__ 49 AACAAAGATTATGAAAAATACCAAACATCTAAATTCCCGGATAAAAAAAT 98
BSNT_04467___ 99 GGCGATTCTTTCTTGCATGGACACTCGTCTGGTTGAACTGCTGCCGCATG 148
|||||||.|.||.||.||||||||.|||||.||.|||.||||.|||||||
RBAM_027700__ 99 GGCGATTTTGTCCTGTATGGACACACGTCTTGTAGAATTGCTTCCGCATG 148
BSNT_04467___ 149 CGATGAATTTGCGAAACGGTGATGTGAAAATCATTAAAAGTGCCGGTGCG 198
|||||||..||||||||||.|||||||||||.||||||||||||||.|||
RBAM_027700__ 149 CGATGAACATGCGAAACGGCGATGTGAAAATTATTAAAAGTGCCGGCGCG 198
BSNT_04467___ 199 CTTGTGACACACCCATTCGGAAGCATCATGAGAAG---TTTACTCGTCGC 245
|||||..|.|||||.||||||||.||||||.|.|| |||| ||.||
RBAM_027700__ 199 CTTGTCGCCCACCCGTTCGGAAGTATCATGCGCAGCCTTTTA---GTGGC 245
BSNT_04467___ 246 AGTGTACGAGCTGAATGCAGATGAGGTGTGTGTGATCGGGCATCACGATT 295
.||.|||||..|.||.||.|||||.||.||.||.|||||.||.||.||||
RBAM_027700__ 246 CGTATACGAATTAAACGCCGATGAAGTCTGCGTTATCGGCCACCATGATT 295
BSNT_04467___ 296 GCGGCATGAGCAAAATCAGCAGCAAAAGCATGCTTGAAAAAATCAAAGCA 345
||||||||||||||||||.||||.|....|||||.||.|||||.|..|..
RBAM_027700__ 296 GCGGCATGAGCAAAATCAACAGCGAGGATATGCTCGATAAAATTATCGAC 345
BSNT_04467___ 346 AGAGGGATTCCGGAAGAACGCATCGAAACAATAAAGTACTCCGGTGTAGA 395
.|.||.||||||.||||.||.||.||.|...|.|||.||||.||.||.||
RBAM_027700__ 346 CGCGGTATTCCGAAAGAGCGGATTGACATGCTGAAGCACTCAGGAGTTGA 395
BSNT_04467___ 396 CTTTGATCAATGGTTTAAAAGCTTTGATTCAGTGGAAGCGAGTGTGAAAG 445
..|||||||||||.|.|||||||||||||||||.|||||||||||.|.||
RBAM_027700__ 396 TCTTGATCAATGGCTGAAAAGCTTTGATTCAGTAGAAGCGAGTGTTACAG 445
BSNT_04467___ 446 ACAGCGTAGACGTTATTAAACATCACCCGCTGTTCCCTGAAAACGTTCCG 495
||||||||.||||.||||||||.||.|||||.||||||||.||.||.|||
RBAM_027700__ 446 ACAGCGTAAACGTCATTAAACACCATCCGCTATTCCCTGACAATGTGCCG 495
BSNT_04467___ 496 GTCCATGGCTTAGTCATTGATCCTAAAACCGGAAAACTGGATC---TTAT 542
||.||.||..|.||.|||||||||.|||||||.|||||.|||| |.||
RBAM_027700__ 496 GTGCACGGTCTGGTGATTGATCCTGAAACCGGTAAACTTGATCTGGTGAT 545
BSNT_04467___ 543 CGTAAACGGTT------ATAACAATTAA 564
|| ||||.| |||...|.|||
RBAM_027700__ 546 CG---ACGGCTACCAGCATATGGACTAA 570
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