Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04465 and RBAM_027680

See Amino acid alignment / Visit BSNT_04465 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:58
# Commandline: needle
#    -asequence dna-align/BSNT_04465___luxS.1.9828.seq
#    -bsequence dna-align/RBAM_027680___luxS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04465___luxS-RBAM_027680___luxS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04465___luxS-RBAM_027680___luxS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04465___luxS
# 2: RBAM_027680___luxS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 474
# Identity:     401/474 (84.6%)
# Similarity:   401/474 (84.6%)
# Gaps:           0/474 ( 0.0%)
# Score: 1713.0
# 
#
#=======================================

BSNT_04465___      1 ATGCCTTCAGTAGAAAGTTTTGAGCTTGATCATAATGCGGTTGTTGCTCC     50
                     |||||||||||||||||||||||||||||.||||||||||||||.|||||
RBAM_027680__      1 ATGCCTTCAGTAGAAAGTTTTGAGCTTGACCATAATGCGGTTGTGGCTCC     50

BSNT_04465___     51 ATATGTAAGACATTGCGGCGTGCATAAAGTGGGAACAGACGGCGTTGTAA    100
                     .|||||||||||||||||.|||||||||||.||||||||||||||.||.|
RBAM_027680__     51 GTATGTAAGACATTGCGGAGTGCATAAAGTCGGAACAGACGGCGTCGTGA    100

BSNT_04465___    101 ATAAATTTGACATTCGTTTTTGCCAGCCAAATAAACAGGCGATGAAGCCT    150
                     ||||.|||||||||||.||.||||||||.||.|||||||||||||||||.
RBAM_027680__    101 ATAAGTTTGACATTCGCTTCTGCCAGCCGAACAAACAGGCGATGAAGCCG    150

BSNT_04465___    151 GACACCATTCACACACTCGAGCATTTGCTCGCGTTTACGATTCGTTCTCA    200
                     ||.||||||||.||.||.|||||.|||||.||||||||||||||..|.||
RBAM_027680__    151 GATACCATTCATACGCTTGAGCACTTGCTTGCGTTTACGATTCGCACACA    200

BSNT_04465___    201 TGCTGAGAAATACGATCATTTTGATATCATTGATATTTCTCCAATGGGCT    250
                     |.||||||||||||||||.||.||.|||||.|||||.||.||.|||||||
RBAM_027680__    201 TTCTGAGAAATACGATCACTTCGACATCATAGATATCTCACCGATGGGCT    250

BSNT_04465___    251 GCCAGACAGGCTATTATCTAGTTGTGAGCGGAGAGCCGACATCAGCGGAA    300
                     |||||||||||||||||||.|||||.|||||.|||||||||.|.|..|||
RBAM_027680__    251 GCCAGACAGGCTATTATCTTGTTGTCAGCGGGGAGCCGACAGCGGAAGAA    300

BSNT_04465___    301 ATCGTTGATCTGCTTGAAGACACAATGAAGGAAGCGGTAGAGATTACAGA    350
                     ||.||.||.||||||||.|..||..||||.|||||..|.||.|||||.||
RBAM_027680__    301 ATTGTAGACCTGCTTGACGCTACGCTGAAAGAAGCCATCGATATTACGGA    350

BSNT_04465___    351 AATACCAGCTGCGAATGAAAAGCAGTGCGGCCAAGCGAAGCTTCATGATC    400
                     .||.||.||.||.||.|||||.|||||||||||.|||||.|||||||||.
RBAM_027680__    351 GATTCCGGCGGCCAACGAAAAACAGTGCGGCCAGGCGAAACTTCATGATT    400

BSNT_04465___    401 TGGAAGGTGCTAAACGTTTAATGCGTTTCTGGCTTTCACAGGATAAAGAA    450
                     |.|||||.||.||||||.|.||||||||||||||.|||||||||||||||
RBAM_027680__    401 TAGAAGGCGCGAAACGTCTGATGCGTTTCTGGCTGTCACAGGATAAAGAA    450

BSNT_04465___    451 GAATTGTTAAAAGTATTTGGCTAA    474
                     ||.|||.|.|||||.||.||.|||
RBAM_027680__    451 GATTTGCTGAAAGTGTTCGGATAA    474


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