Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04460 and RBAM_027650

See Amino acid alignment / Visit BSNT_04460 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:58
# Commandline: needle
#    -asequence dna-align/BSNT_04460___ytkC.1.9828.seq
#    -bsequence dna-align/RBAM_027650___ytkC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04460___ytkC-RBAM_027650___ytkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04460___ytkC-RBAM_027650___ytkC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04460___ytkC
# 2: RBAM_027650___ytkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 421
# Identity:     318/421 (75.5%)
# Similarity:   318/421 (75.5%)
# Gaps:          20/421 ( 4.8%)
# Score: 1202.0
# 
#
#=======================================

BSNT_04460___      1 ---ATGGAT---------AGAGACTTTGGCATCTTTTCGTTTTTAGCAGT     38
                        .|||||         |.||||||||||||||||||||||||.|||||
RBAM_027650__      1 ATGTTGGATCAAGTGGGCAAAGACTTTGGCATCTTTTCGTTTTTTGCAGT     50

BSNT_04460___     39 CAGCGTTTCAGCAGCGGGTTTTTTCTTTGGAGGTTTTCAGTATTCATTTC     88
                     .|.|.|.||.||||||||.||||||||.|||||||||||||||||.||||
RBAM_027650__     51 GATCATGTCGGCAGCGGGGTTTTTCTTCGGAGGTTTTCAGTATTCGTTTC    100

BSNT_04460___     89 TGATTTTGCTCTCTCTTATGGCAATTGAATTTATCAGTACGACTTTGAAG    138
                     ||||||||||.||..|.|||||.|||||.|||||||||||.|..||.||.
RBAM_027650__    101 TGATTTTGCTATCGGTCATGGCGATTGAGTTTATCAGTACAAGCTTAAAA    150

BSNT_04460___    139 GAAACCATTATTCACAAACTG---TCATTTAAAAAGGTATTTGCCCGGCT    185
                     |||.|..||.|.||..|.|||   .||   |.||||.|.|||||.|||||
RBAM_027650__    151 GAATCTCTTTTGCAGCAGCTGAGCGCA---AGAAAGCTTTTTGCGCGGCT    197

BSNT_04460___    186 TGTCAAAAAATTAGTCACGCTGGCTCTGATCTCTGTATGCCACTTTTTTG    235
                     .|||||||||.|.||.||.|||||..|..||||.||.|||||.|||||||
RBAM_027650__    198 GGTCAAAAAAATCGTGACCCTGGCATTAGTCTCAGTTTGCCATTTTTTTG    247

BSNT_04460___    236 ATCAGCTGCTGAATACACAGGGATCAATTCGTGACTTGGCTATTATGTTT    285
                     |.||||||||..||||..|.||..|.||.|||.|.||||||||.||||||
RBAM_027650__    248 ACCAGCTGCTTCATACCGAAGGTGCCATCCGTAATTTGGCTATCATGTTT    297

BSNT_04460___    286 TATATTCTT-TATGAATCTGTGCAAATTGTTGTGACAGCCAGTTCTCTTG    334
                     |||| |||| ||.|||||.||.||.||.||..|.||.||.||.||.||.|
RBAM_027650__    298 TATA-TCTTATACGAATCGGTTCAGATCGTGATTACGGCAAGCTCGCTGG    346

BSNT_04460___    335 GCATACCGGTTCCTCAGATGCTTGTCGATCTTTTAGAAACGTTAAAAAAT    384
                     |||||||||||||.|||.||||.|||||.||.||.||.||.||.||||||
RBAM_027650__    347 GCATACCGGTTCCGCAGGTGCTCGTCGACCTATTGGATACTTTGAAAAAT    396

BSNT_04460___    385 AAATTTAAGCGCAAACCGTAA    405
                     |||||.|||||||||||||||
RBAM_027650__    397 AAATTCAAGCGCAAACCGTAA    417


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