Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04459 and RBAM_027640

See Amino acid alignment / Visit BSNT_04459 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:57
# Commandline: needle
#    -asequence dna-align/BSNT_04459___ytkD.1.9828.seq
#    -bsequence dna-align/RBAM_027640___ytkD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04459___ytkD-RBAM_027640___ytkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04459___ytkD-RBAM_027640___ytkD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04459___ytkD
# 2: RBAM_027640___ytkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 490
# Identity:     383/490 (78.2%)
# Similarity:   383/490 (78.2%)
# Gaps:          23/490 ( 4.7%)
# Score: 1493.0
# 
#
#=======================================

BSNT_04459___      1 ATGTACGAGTTTAAAGATTATTATCAGAATACTGTTCAGCTTTCCTTTGA     50
                     |||||||||||||||||.|||||||||||.|||||||||||.||||||||
RBAM_027640__      1 ATGTACGAGTTTAAAGACTATTATCAGAACACTGTTCAGCTCTCCTTTGA     50

BSNT_04459___     51 CGATCAGCCTTTCTCGGACAGCCCGAAGCATGTCTGGGTGATTTGCCGTT    100
                     ..|.||||||||.||.||||||||||||||.||.|||||.||.|||||.|
RBAM_027640__     51 ACACCAGCCTTTTTCAGACAGCCCGAAGCACGTATGGGTCATATGCCGAT    100

BSNT_04459___    101 TTGGCGGCAAATGGCTTTTAACAGAACATGAGGACAGAGGCTATGAGTTT    150
                     ..||.|..||.||||||||.||.||.||.||.|||.|.||.|.|||.|||
RBAM_027640__    101 ACGGAGATAAGTGGCTTTTGACTGAGCACGAAGACCGGGGGTTTGAATTT    150

BSNT_04459___    151 CCAGGCGGGAAAGTAGAGCCGATGGAGTGCGCAGAAGAGGCTGCGCTCCG    200
                     ||.|||||.|||||.|||||||||||.||.||.||.||.||.||.||.||
RBAM_027640__    151 CCGGGCGGAAAAGTGGAGCCGATGGAATGTGCGGAGGAAGCGGCCCTGCG    200

BSNT_04459___    201 GGAAGTAAAGGAAGAGACGGG---CGCGAGAGTCAAAAGCCTCAAGTATC    247
                     .||.||.||.|||||.||.||   ||||   ||.|.|...||.|||||..
RBAM_027640__    201 CGAGGTGAAAGAAGAAACCGGTGCCGCG---GTAAGACATCTGAAGTACG    247

BSNT_04459___    248 TCGGACAGTATAAAGTTCTCGGAAAAGAAAAAGTGATTGTAAAAAATATA    297
                     ||||||||||||||||||||||.|..|||||.||.||.|||||.|||||.
RBAM_027640__    248 TCGGACAGTATAAAGTTCTCGGCAGGGAAAAGGTAATCGTAAAGAATATT    297

BSNT_04459___    298 TATTTTGCAGATATAGAAAAGCTTGAAAAGCAGGCTGATTACTTTGAAAC    347
                     ||||||||.|||||.||||||||||||||.|||||||||||.||||||||
RBAM_027640__    298 TATTTTGCCGATATTGAAAAGCTTGAAAAACAGGCTGATTATTTTGAAAC    347

BSNT_04459___    348 GAAAGGCCCGGTTTTGTTTCA-CGAGCTGCCGGAGAACCTTTCCCGC--A    394
                     .||.||.|||||..|| |||| |||.|||||||||||  |.||||||  |
RBAM_027640__    348 AAAGGGGCCGGTGCTG-TTCAGCGAACTGCCGGAGAA--TCTCCCGCGAA    394

BSNT_04459___    395 ATAAAAAATTCAGCTTTATTATGAAGGATTCCGTTCTTCCGATCAGCTTG    444
                     |||||||||||||.||.||||||||.|||||.||.||||||||||||.||
RBAM_027640__    395 ATAAAAAATTCAGTTTCATTATGAAAGATTCGGTGCTTCCGATCAGCCTG    444

BSNT_04459___    445 AAAAAACTGAAAGAATCTGGATGG----ATTGAATAA---    477
                     |||||.||||||||    |||.||    .||.|||.|   
RBAM_027640__    445 AAAAAGCTGAAAGA----GGACGGCGTATTTCAATCATAA    480


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