Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04450 and RBAM_027590

See Amino acid alignment / Visit BSNT_04450 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:57
# Commandline: needle
#    -asequence dna-align/BSNT_04450___ytmB.1.9828.seq
#    -bsequence dna-align/RBAM_027590___ytmB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04450___ytmB-RBAM_027590___ytmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04450___ytmB-RBAM_027590___ytmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04450___ytmB
# 2: RBAM_027590___ytmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 245
# Identity:     184/245 (75.1%)
# Similarity:   184/245 (75.1%)
# Gaps:           4/245 ( 1.6%)
# Score: 671.5
# 
#
#=======================================

BSNT_04450___      1 TTGGGAATGCCTGTTGAATTTAATACACTGATTGTGACAAAAGGAAAAGA     50
                     ||||||||||||||||||||||||||..||||||||||||||||.||.||
RBAM_027590__      1 TTGGGAATGCCTGTTGAATTTAATACCATGATTGTGACAAAAGGCAATGA     50

BSNT_04450___     51 AGTTCGCATAGATGAAAATATATTCACGTTAGAGAAGGACGGATACCGAG    100
                     |...||.|||||.||||||||.||....||.|||||.||.||.|||||.|
RBAM_027590__     51 AAAACGGATAGAGGAAAATATCTTTTTATTGGAGAAAGAGGGCTACCGCG    100

BSNT_04450___    101 TATATCCGATGGAGATTCCAATGGATGTACGCAAAACAAAGTTTGGCGAA    150
                     |.|||||..|.||.|||||.|||||.||.||||||||.||....|||||.
RBAM_027590__    101 TCTATCCTCTTGATATTCCGATGGACGTGCGCAAAACGAAAACCGGCGAG    150

BSNT_04450___    151 AAGTCAGGCACAGCTGAAGTGCAGAAGCTTCAATGGGAAGACGGCCGGAC    200
                     ||.||.|||||.|..||.||.||.|||||..||||||...||||||||||
RBAM_027590__    151 AAATCCGGCACCGGCGAGGTCCAAAAGCTCGAATGGGCGAACGGCCGGAC    200

BSNT_04450___    201 CATCATTACATACAAGCTGACTTCTTTGCATTCCGTCAA--TTAA    243
                     .|.|||||||||||..||.||.||..|.|||| ||.|||  |.| 
RBAM_027590__    201 AAGCATTACATACAGACTCACGTCGCTCCATT-CGACAAACTGA-    243


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