Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04442 and RBAM_027520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:55
# Commandline: needle
# -asequence dna-align/BSNT_04442___ytpB.1.9828.seq
# -bsequence dna-align/RBAM_027520___ytpB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04442___ytpB-RBAM_027520___ytpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04442___ytpB-RBAM_027520___ytpB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04442___ytpB
# 2: RBAM_027520___ytpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1112
# Identity: 850/1112 (76.4%)
# Similarity: 850/1112 (76.4%)
# Gaps: 34/1112 ( 3.1%)
# Score: 3246.0
#
#
#=======================================
BSNT_04442___ 1 GTGTTGACAGTACCGGAACATCCTTTTGGATTGATGGCAAAGGTATATCG 50
.||||||||||||||||||||||||||....|.||||||||.||.|||||
RBAM_027520__ 1 ATGTTGACAGTACCGGAACATCCTTTTAACCTTATGGCAAAAGTGTATCG 50
BSNT_04442___ 51 AGATATTTTTCCGCTCGTTCATCAAGAGCTGGACATATGGAAGCAAAAAT 100
.||.||||||||||||||||||||.||..||.||||.|||..|.||||||
RBAM_027520__ 51 GGAAATTTTTCCGCTCGTTCATCAGGAATTGAACATGTGGCGGGAAAAAT 100
BSNT_04442___ 101 CAGAATCGATTCATAACAGTGAATTGAAAGCA-CAGGCAACCGCAAGTAT 149
||||.||.|||.|.||.|..|||.|| ..||| |||||..||||||||||
RBAM_027520__ 101 CAGATTCCATTAAAAATACCGAACTG-CGGCAGCAGGCGGCCGCAAGTAT 149
BSNT_04442___ 150 TCGGGACAAAACGTTTCACTGTGAAGGCGGCGGCATACTGGCCTTATTGT 199
.||.||.|||.|||||||.|||||||||||||||||..|.|||.|..|.|
RBAM_027520__ 150 CCGCGATAAATCGTTTCATTGTGAAGGCGGCGGCATTTTAGCCCTGCTTT 199
BSNT_04442___ 200 CAGGCAG-CCAAAAACAGAAATGTGTCGAGTTTATCATCGCGTATCAAAC 248
| ||.|| .||.|||||||||||.||..|.|||||||||||||||||.||
RBAM_027520__ 200 C-GGGAGAGCAGAAACAGAAATGCGTGCAATTTATCATCGCGTATCAGAC 248
BSNT_04442___ 249 GATTAGTGATTATTTGGACAATCTGTGTGACCGCAGCACCTCGCTGGA-C 297
.||.|||||||||.|||||||||||||.|||||||||||||||||.|| |
RBAM_027520__ 249 AATCAGTGATTATCTGGACAATCTGTGCGACCGCAGCACCTCGCTTGATC 298
BSNT_04442___ 298 CCGCAGGATTTTCGGATGCTCCATGCCTCAATGCAGGATGCACTGACAGT 347
||| ||||.||.||.|||||.|||..|||.||||..||.||.|||||.||
RBAM_027520__ 299 CCG-AGGACTTCCGCATGCTTCATCTCTCCATGCGTGACGCGCTGACGGT 347
BSNT_04442___ 348 TGGGGCGGAACTGCAAAACTATTATCAATTCAGGGAAGAACAGGATGACA 397
.||.||.||..|||.....||.|||||.|.|||.||.||.|||||||||.
RBAM_027520__ 348 CGGCGCCGAGGTGCGGCCGTACTATCAGTACAGAGACGAGCAGGATGACG 397
BSNT_04442___ 398 GCGGATATCTGCACGAACTGGTCAAAACGTGCCAGCGTGTCCTTGGTTCC 447
||||.|||||.||.||.|||||||.|||.||||||||.||.||.||.||.
RBAM_027520__ 398 GCGGTTATCTTCATGAGCTGGTCAGAACATGCCAGCGGGTGCTCGGGTCA 447
BSNT_04442___ 448 ATTGAGCACTATGACATGATTAAACCTTATCTGCTTGAACTGTGCGGCTA 497
||.||.||.||.|..||.||||||||||||.|||||||.|||||.|..||
RBAM_027520__ 448 ATAGAACATTACGGTATCATTAAACCTTATTTGCTTGAGCTGTGTGATTA 497
BSNT_04442___ 498 TTATTGCGATTTGCAGGTGCATAAGCACGTTATTGAGCATGAGCGTGTTC 547
|||||||||..|.|||||.||||||||.||..||||||||||.||.||||
RBAM_027520__ 498 TTATTGCGACCTTCAGGTTCATAAGCATGTCGTTGAGCATGAACGCGTTC 547
BSNT_04442___ 548 CGCGGCTTGAAAAG--TGGTTTACTCAATATGAATCAGAGCTGCCTGAGA 595
||.||||| |||| ||||||...||.||....|||.||||.||.||.|
RBAM_027520__ 548 CGAGGCTT--AAAGGCTGGTTTGAGCAGTACCGGTCACAGCTTCCGGAAA 595
BSNT_04442___ 596 TGGAATGGTATGAATTTTCAGCCTGTGCAGGCTCAACGTTAGGCATTTTC 645
||||.||||.|||.||.||.|||||.||.||.||.|||||||||||||||
RBAM_027520__ 596 TGGAGTGGTTTGAGTTCTCGGCCTGCGCCGGATCGACGTTAGGCATTTTC 645
BSNT_04442___ 646 TGTCTGGTTGCGTATTCGTTCCAGCCTGATTTCACAGAAAGCACCGCTAA 695
|||||.|||||.||.||.||||||.|||||||.|..|||...||||||.|
RBAM_027520__ 646 TGTCTCGTTGCTTACTCATTCCAGTCTGATTTTAACGAACATACCGCTGA 695
BSNT_04442___ 696 AAAAATCCGCGACAGTTATTTTCCTTACATACAGGGCCTTCATATCCTGC 745
.|||||||||..||||||||||||.||||||||.||.||.|||||.||||
RBAM_027520__ 696 GAAAATCCGCAGCAGTTATTTTCCGTACATACAAGGGCTGCATATACTGC 745
BSNT_04442___ 746 TTGATTATTTGATTGATCAAGAGGAGGACTTGCTGGAAGGAGACTTGAAT 795
||||||||||.|||||.||.||.|||||..||||.|||||.||..|||||
RBAM_027520__ 746 TTGATTATTTAATTGACCAGGAAGAGGATCTGCTTGAAGGCGATCTGAAT 795
BSNT_04442___ 796 TTCTGCTCATATTATCAGTCTCATGAAGAGATGATGAATCGGCTTGAACA 845
|||||..|.||||||||||||||||||||.||||||.|..|.||..|.||
RBAM_027520__ 796 TTCTGTACGTATTATCAGTCTCATGAAGAAATGATGCAGAGACTGCAGCA 845
BSNT_04442___ 846 CTTTATCCATAAAGCCGACGAGCATTTACAAGGCATTCCGCATGAAAACT 895
.|||||..|.|||||.||.||.|||||.||||||||||||||||||||.|
RBAM_027520__ 846 TTTTATTGAAAAAGCGGATGAACATTTGCAAGGCATTCCGCATGAAAATT 895
BSNT_04442___ 896 TCCATCGTTTAATCAATCGCGGCTTGCTTGGTGTTTATTTGTCAGATGAT 945
|.||.||..|.|||||..|.||..||||.||.||.|||||.||.|||||.
RBAM_027520__ 896 TTCACCGGCTGATCAACAGAGGGCTGCTCGGCGTCTATTTATCCGATGAC 945
BSNT_04442___ 946 AAAGTGGCAGGCCAAAAGGAAATGGGCCGGCTCGCAAAGAAGCTGATCAA 995
|||||.||.||||||||.|||||||||||.|||||....||||||||||.
RBAM_027520__ 946 AAAGTCGCCGGCCAAAAAGAAATGGGCCGCCTCGCGCGAAAGCTGATCAG 995
BSNT_04442___ 996 AGCCAGCGGAAAAACCTCCCTTTTCTTTTATATCAACGGCAGAGCCTACC 1045
.||.|||||||||||.||..|||||||||||||||||||.||||||||||
RBAM_027520__ 996 GGCTAGCGGAAAAACGTCATTTTTCTTTTATATCAACGGAAGAGCCTACC 1045
BSNT_04442___ 1046 GGAAATTTCAAAAAATGTCCTGGATGAAAAACTCAAAGAAAAAAGCTCAA 1095
|.||||||||.||.|||.|.||||.|||||..|| |.||
RBAM_027520__ 1046 GCAAATTTCAGAAGATGGCTTGGACGAAAAGTTC---GTAA--------- 1083
BSNT_04442___ 1096 ATCATTTGCTGA 1107
RBAM_027520__ 1083 ------------ 1083
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