Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04441 and RBAM_027500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:55
# Commandline: needle
# -asequence dna-align/BSNT_04441___ytqB.1.9828.seq
# -bsequence dna-align/RBAM_027500___ytqB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04441___ytqB-RBAM_027500___ytqB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04441___ytqB-RBAM_027500___ytqB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04441___ytqB
# 2: RBAM_027500___ytqB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 614
# Identity: 414/614 (67.4%)
# Similarity: 414/614 (67.4%)
# Gaps: 61/614 ( 9.9%)
# Score: 1284.0
#
#
#=======================================
BSNT_04441___ 1 ATGATTTTGAAGAAAATTCTTCCTTACAGCAAAGAACTGCTGAAAATGGC 50
||||..||||.|.|.||.||.||||.|||.||||||.||||||| |.|
RBAM_027500__ 1 ATGACCTTGATGCACATCCTCCCTTTCAGTAAAGAATTGCTGAA---GTC 47
BSNT_04441___ 51 CGCGGGA---GAGGGAGATATTGTCGTAGATGCGACAATGGGCAACGGAC 97
|||.|.| ||.||.|||||....||.||.|||||.|||||||||||||
RBAM_027500__ 48 CGCCGCACAGGAAGGTGATATCACGGTTGACGCGACGATGGGCAACGGAC 97
BSNT_04441___ 98 ATGATACACAGTTTTTAGCGGAGCTTGTCGGTGAAAACGGCCATGTATAC 147
||||||||.|.|||.|.||.|..|||||||||||.|..||.|||||..|.
RBAM_027500__ 98 ATGATACATACTTTCTGGCCGGCCTTGTCGGTGAGACAGGACATGTCCAT 147
BSNT_04441___ 148 GCATTCGACATCCAAGAATCAGCCG---TGGCCAATACAAAGGAACGGCT 194
||.||.||.||.|||| |.|.|| |.||.||.||.|||||.|||||
RBAM_027500__ 148 GCCTTTGATATTCAAG---CGGACGCACTCGCTAAAACGAAGGAGCGGCT 194
BSNT_04441___ 195 CGGT---GACATGTATCAAGCGCGAACAACGTTA--TTTCAC---AAAAG 236
|||| |||.|...|| |||| |||.| .||||| ||.||
RBAM_027500__ 195 CGGTGCCGACTTCAGTC---CGCG-----CGTCACGCTTCACCATAAGAG 236
BSNT_04441___ 237 CCATGATAAAATCGCTGAATCCCTCCCGCCT---GAAACACATGGCAAAG 283
|||||||.||||....|.|||.|| |||| ||..|.||.||....|
RBAM_027500__ 237 CCATGATCAAATAAAGGCATCGCT---GCCTGAGGATGCGCACGGTCGTG 283
BSNT_04441___ 284 TGGCGGCCGCGGTATTTAACCTCGGCTATTTGCCGGGCGGGGACAAATCA 333
||||...|||.||.|||||.|||||||||.||||.|||||.||.|||...
RBAM_027500__ 284 TGGCTTGCGCCGTGTTTAATCTCGGCTATCTGCCCGGCGGCGATAAAAGC 333
BSNT_04441___ 334 ATTACGACAAACGGCAGTTCTACGATCAAAGCCATTGAACAGCTTCT--- 380
|||||||||||||||...||.||.||....||.||.||||||||.||
RBAM_027500__ 334 ATTACGACAAACGGCCACTCAACCATTTCCGCGATCGAACAGCTCCTTGA 383
BSNT_04441___ 381 -CAGCATCATGAAAGACGAA-GGTCTGATTGTTCTCGTCGTCTATCATGG 428
|.|| ||||.|| ||| ||.|||||.||||||||.||.||.||.||
RBAM_027500__ 384 ACTGC----TGAAGGA-GAACGGGCTGATCGTTCTCGTTGTGTACCACGG 428
BSNT_04441___ 429 CCACCCGGAAGGCAAAGCTGAAAAAAACGACGTG-----CTCGAGTTTTG 473
.||.||.||||||||..|.||||||| ||| ||.||||..||
RBAM_027500__ 429 GCATCCTGAAGGCAAGACGGAAAAAA-----GTGCATTACTGGAGTACTG 473
BSNT_04441___ 474 CCGGGA-CTTGGACCAGCAATCAGCCCGTGTATTAACATACGGATTTATC 522
|.|..| ||| ||.|||.||..|||.||.||..|.|..|||||.|||.||
RBAM_027500__ 474 CAGCAATCTT-GATCAGGAAAAAGCGCGCGTGCTGAGCTACGGCTTTCTC 522
BSNT_04441___ 523 AATCAGCAAAATGACCCGCCATTTATTGTCGCCATCGAAAAAAAAGCT-C 571
||.||||.|||.||||||||.||||||.|.||.||.|||||.|||.|| |
RBAM_027500__ 523 AACCAGCGAAACGACCCGCCGTTTATTATAGCGATTGAAAAGAAATCTGC 572
BSNT_04441___ 572 AGATCAGCAAATGA 585
|.||||||.|
RBAM_027500__ 573 ----CGGCAAATAA 582
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