Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04433 and RBAM_027370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:54
# Commandline: needle
# -asequence dna-align/BSNT_04433___ytrD.1.9828.seq
# -bsequence dna-align/RBAM_027370___ytrC1.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04433___ytrD-RBAM_027370___ytrC1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04433___ytrD-RBAM_027370___ytrC1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04433___ytrD
# 2: RBAM_027370___ytrC1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1140
# Identity: 618/1140 (54.2%)
# Similarity: 618/1140 (54.2%)
# Gaps: 315/1140 (27.6%)
# Score: 1374.5
#
#
#=======================================
BSNT_04433___ 1 ---ATGCC----GGATTCCGGTCTGCTTTATAAGGAGTGGAAACAAAATA 43
||.|| |||| ||.|.||.|..||.|||||..|||||
RBAM_027370__ 1 ATGATACCGCGGGGAT-------TGTTGTACACAGAATGGAAGAAAAAT- 42
BSNT_04433___ 44 AAGTCGCCTTAGTTATCACCATTTTGGTTTTTATAC-------------T 80
.|||.| |.||||||||.| |
RBAM_027370__ 43 CAGTGG------------------TTGTTTTTATGCAGCGGCATTCTTTT 74
BSNT_04433___ 81 A-----GGTAATCC--TTTATCGATTTTCAATATGTATCT-TACCTATCA 122
| ||.||.|| ||||| |.|||..||.|..|| || .||.|||||
RBAM_027370__ 75 AATGGCGGCAAACCCTTTTAT-GGTTTATAACAACTA-CTCAACATATCA 122
BSNT_04433___ 123 AGGCTGT----GTCACCTCAAAAG------AAAATTGGGTTGGTCCCTGC 162
||..||| .|.||| ||| ||.|| ||.
RBAM_027370__ 123 AGAATGTTTGAATAACC----AAGCTCTTCAAGAT------------TGT 156
BSNT_04433___ 163 GTATTCGGTGTTGATTATTTAAACGG--CACATTTATCTCATTTTTT--- 207
|.|||||.|||..|||||...||.|| |.| |||.||..||
RBAM_027370__ 157 GAATTCGTTGTCAATTATACGAATGGGTCGC------CTCTTTCCTTCAG 200
BSNT_04433___ 208 -TGGATTTGGGGAGTCGTTTTGGCGGTC--------AGCCAGCTTGGGAT 248
||||.|....|.|||.|..|.||.||| || |||||
RBAM_027370__ 201 CTGGAGTGTAAGTGTCATCATTGCTGTCTTCTTATTAG---GCTTG---- 243
BSNT_04433___ 249 TGAACGTAGCAA-------GA--GCTTCTTTGATTTTACATTAAGCCTAC 289
|||||.| ||| || |.|.||||| ||||||.|.|
RBAM_027370__ 244 -GAACGGA-CAAAGGGAACGATGGATGCTTTG--------TTAAGCATGC 283
BSNT_04433___ 290 CATATA-CACGAGGGCAGATATTTCATGCGAAGTTCTTTAC-CGGCGGAA 337
|.||.| || ||||.||.||.|||||..||||.|| ||..| ||||||..
RBAM_027370__ 284 CTTACAGCA-GAGGCCAAATCTTTCAGACGAAATT-TTGGCTCGGCGGGG 331
BSNT_04433___ 338 TGGTGATTGTGGTGCCGCAGCTCATAGGTTA--------CGTTTTGTCTG 379
..||.|||||.||.||.|||...|||||.|| |||
RBAM_027370__ 332 CAGTCATTGTTGTTCCTCAGGCGATAGGCTATGGAGCGGCGT-------- 373
BSNT_04433___ 380 TTTTGCTGATCATGCTTT--TGA-----AGCCA-------GATCAGGCCG 415
..|||||||| || |||| ||| ||||| |||
RBAM_027370__ 374 CATTGCTGAT-AT-CTTTGCTGAAACCGAGCCATACGTACGAT------- 414
BSNT_04433___ 416 TTT----ATTTTCACAATTACAGCCTTGGGATGATCATTGTCAGCA---T 458
||| ||||| .||| |.||| ||.|||||||.|| |
RBAM_027370__ 415 TTTGATCATTTT-TCAA---------TCGGA--ATGATTGTCATCAGTTT 452
BSNT_04433___ 459 GCTGGCTTATTCG-CTTGTT-ATGGCGGGTGGAGCTCTGACAGGCAATAT 506
..||||||| || |||||| |||||....||.||..|.||.||..|.||
RBAM_027370__ 453 TATGGCTTA--CGCCTTGTTAATGGCATCCGGCGCATTAACGGGACAGAT 500
BSNT_04433___ 507 TTTTGCCCAGCTTTT---GGTCTCATTTACCGT---GGCCATTTC-GCCA 549
.||.||||||||.|| || |.|||||.|| || ||| |||.
RBAM_027370__ 501 ATTCGCCCAGCTGTTAACGG---CGTTTACAGTAACGG----TTCTGCCC 543
BSNT_04433___ 550 TTTTTGCTCA----TCAGCCTGCCTGCGATCAACCTCGAGATC------- 588
|||||.|||| ||.|||.||| ||| ||..|.|||.||
RBAM_027370__ 544 TTTTTACTCATTGGTCTGCCGGCC-GCG---AATTTGGAGGTCGTTTTCG 589
BSNT_04433___ 589 --CTTATTGGCG--GATCAA---TCGATTTTATCCATGGTCCAG---TAC 628
.|||.||.|| |||||| || ||||||| ..||| ||.
RBAM_027370__ 590 ATATTAGTGTCGGAGATCAATTTTC--TTTTATC-----AGCAGTTATAT 632
BSNT_04433___ 629 CCAAATGGGTGCAGTATTT---CATT-------CCTATAATTTATGT--- 665
|.|| |.|.||.||| .||| |||||....|||||
RBAM_027370__ 633 CGAA-----TCCCGTCTTTTTATATTTGTAACCCCTATTGGATATGTGTT 677
BSNT_04433___ 666 ---AGAC----TCA---AAATGGGCTGAGAATTCACCATATT---ATTTA 702
.||| ||| |||.|| ||| .||||
RBAM_027370__ 678 TAACGACTGGATCAGAGAAAGGG----------------ATTTGGTTTTA 711
BSNT_04433___ 703 GTGATTCCGGCTATCATGACTATCATCTTCTACATCATCGGCTATATTAG 752
.|.||||||..|.|.||||...|..||||.||..|.|||||.|||.|.||
RBAM_027370__ 712 ATCATTCCGATTGTGATGAGCCTTGTCTTTTATCTGATCGGTTATGTCAG 761
BSNT_04433___ 753 CTTTGTCAAACTGTCTAATGAAAGAAACGG-ATATTTCTTCTTATGG--- 798
||||.|.||||...|.||||||.|.||||| |.|||..||||| |||
RBAM_027370__ 762 CTTTCTGAAACACCCGAATGAACGGAACGGCAGATTCTTTCTT-TGGAGA 810
BSNT_04433___ 799 -AAGCCGCTT-AACCGCCCGGTGCAGATCATCGTTATTATCATAGGAATC 846
|| || .||||.||||||||||||.|.||.|||..|.|.|...|.
RBAM_027370__ 811 AAA-----TTGGACCGTCCGGTGCAGATCTTGGTGATTGCCTTTGCTGTT 855
BSNT_04433___ 847 ATGGGGTTTGGCTATTTTGGATTTTCTGCCAGCGAGA-GCTTTACAGGCT 895
|||||.||.|||..|||.||||.|...|.||..||.| |.|.|.| ||||
RBAM_027370__ 856 ATGGGTTTCGGCGTTTTCGGATATGGGGTCACAGACACGATGTTC-GGCT 904
BSNT_04433___ 896 ATCT------CATTGGCATGGCTGCCGGCGCGGTAATCGGTTTCTTGATT 939
||.| ||||..|.| |||||||||.|||||.||.||.||.
RBAM_027370__ 905 ATTTAGCCGGCATTATCTT------CGGCGCGGTTATCGGGTTTTTCATC 948
BSNT_04433___ 940 AGTTATTTTGCGATTTATAAAAAAATGAAA-CTTTTGTAA 978
|||||||||.||.|||| .|..||.|.||| |.|.||||.
RBAM_027370__ 949 AGTTATTTTACGGTTTA-CAGGAAGTCAAAGCATATGTAG 987
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