Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04431 and RBAM_027340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:54
# Commandline: needle
# -asequence dna-align/BSNT_04431___ytrF.1.9828.seq
# -bsequence dna-align/RBAM_027340___ytrF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04431___ytrF-RBAM_027340___ytrF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04431___ytrF-RBAM_027340___ytrF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04431___ytrF
# 2: RBAM_027340___ytrF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1348
# Identity: 1008/1348 (74.8%)
# Similarity: 1008/1348 (74.8%)
# Gaps: 74/1348 ( 5.5%)
# Score: 3701.5
#
#
#=======================================
BSNT_04431___ 1 TTGAGGTTTAAGGATCAGGTTCATTTTATCAGAAGAAATATGAAGAAAAA 50
|||||.||||||||||||.||||.||||||||||||||||||||||||||
RBAM_027340__ 1 TTGAGATTTAAGGATCAGATTCACTTTATCAGAAGAAATATGAAGAAAAA 50
BSNT_04431___ 51 CAGACTTCGCGTCTTTATGACGATTCTTGCGACAACAATGGCGTATGCGT 100
|.|.||.||.||.||.||||||.|.||.|||||.||||||||||..||||
RBAM_027340__ 51 CCGGCTGCGTGTTTTCATGACGGTGCTGGCGACGACAATGGCGTGCGCGT 100
BSNT_04431___ 101 TTTTGGTTGTGCTGTCGTCCGTTGGATTTGGGATTCAAAAGACAATTACA 150
||||.||.||||||.|||||||.|||||.||.||.|||||.||.||||||
RBAM_027340__ 101 TTTTAGTGGTGCTGGCGTCCGTCGGATTCGGCATCCAAAAAACGATTACA 150
BSNT_04431___ 151 GATATGACAATGAGCCAGCAGATTGTAACGAAAGTCAGTGTAAT-GGGCA 199
||.||.||.|||||||||||||||||.|||.||.|||.|||..| |||||
RBAM_027340__ 151 GACATTACGATGAGCCAGCAGATTGTTACGGAAATCAATGTGCTCGGGCA 200
BSNT_04431___ 200 AG-GAAGGAGACAAGCCTATTAAAAAAGCTGATTTAGAGAAGTATGATCA 248
|| |||.| ||.||||| .|.||.|||.|.||.||.||.||||||.|..|
RBAM_027340__ 201 AGAGAACG-GAAAAGCC-GTGAAGAAATCAGACTTGGAAAAGTATAAAAA 248
BSNT_04431___ 249 CGTAAGGTCAGTTGTAGAAAGAACGCAAATGTATGAACCAAACAAAGCTA 298
.||.|.|||.||.||.||||||||.|||.||||||||||.||||||||..
RBAM_027340__ 249 TGTCAAGTCTGTCGTTGAAAGAACACAAGTGTATGAACCGAACAAAGCGT 298
BSNT_04431___ 299 CTTTAGGCAATCGTACAAATGAA-----AGCTCAAATCTCATT---TTTA 340
|.||.||.||.||.||||||||| ||| |||| .|.|
RBAM_027340__ 299 CATTGGGAAACCGAACAAATGAAGATTCAGC--------CATTGTGCTGA 340
BSNT_04431___ 341 CTAATATGAATGATGAATTAAAGGCCAATATGGAATTGGAAAAGGGAAGA 390
|.||.|||||.||||||.|.||.|||||||||||..|.||..|||||||.
RBAM_027340__ 341 CAAACATGAACGATGAAGTCAAAGCCAATATGGAGCTTGATCAGGGAAGG 390
BSNT_04431___ 391 GT----CGCAAAGTCGGAAAATGAAATCGTAGTAGGATACGACTTCGCAA 436
|| |||| |.||.|||||||||||.||.||.||.||.||.||.|
RBAM_027340__ 391 GTCGCCCGCA----CAGAGAATGAAATCGTGGTCGGCTATGATTTTGCGA 436
BSNT_04431___ 437 AGAGATTATTGACGAAAAAAGAATCGGAAGAATATAACAAAAAAATCGAA 486
|||...||||||||||||||||..|.||.|..||..|| |||.|.|..||
RBAM_027340__ 437 AGAACCTATTGACGAAAAAAGAGGCTGACGCTTACGAC-AAAGAGTTAAA 485
BSNT_04431___ 487 GAAGCA-AAAGGCAATCCA-----GAGGATATAAAAGAACCAAAAGGCTA 530
|.|.|| .|||||.| || |||| |.|||.|||||||||||||
RBAM_027340__ 486 GGATCACCAAGGCGA--CATGTCGGAGG---TGAAAAAACCAAAAGGCTA 530
BSNT_04431___ 531 TACGAAAGACATTCTGAACAAGACGATTGAACTGAGTGTATCGAAGACAG 580
||||||||||.|.||.||.||.|||||..|.|||||..|.||.||.|||.
RBAM_027340__ 531 TACGAAAGACCTGCTTAATAAAACGATACAGCTGAGCATCTCCAAAACAA 580
BSNT_04431___ 581 ATCCTAAAACAGGGGATGTTACAAAAACAAAAACATATGACTTTAAAATT 630
| |.||.|| ||.||.|||...|||||.|||||.||.|||||||||.|.
RBAM_027340__ 581 A--CAAAGAC-GGAGACGTTGAGAAAACGAAAACGTACGACTTTAAAGTA 627
BSNT_04431___ 631 GTCGGTATTACAAAAAAACCATCTCAAGACTGGATGGAGGACTCAAACAT 680
|||||.||||||||||||||.||.|||||.|||||||||||..||||.||
RBAM_027340__ 628 GTCGGAATTACAAAAAAACCGTCCCAAGATTGGATGGAGGATACAAATAT 677
BSNT_04431___ 681 TTTTATCAGTGATCAATTCAAAAAAGATTTTTCGGAATTCTTAGATTTCA 730
||||.|.||||||||||||||.|||||.||.||...||||||.|||.|.|
RBAM_027340__ 678 TTTTGTGAGTGATCAATTCAAGAAAGACTTCTCAACATTCTTGGATCTGA 727
BSNT_04431___ 731 AAGGCGGAAATGTTGAAACGAACATTGGTGTTTTTGCTGATAAGTTTGAG 780
|....|||||||..||||..|.|||...|||.|.|||.||.||.||.||.
RBAM_027340__ 728 AGAATGGAAATGCGGAAAAAAGCATCAATGTGTATGCGGACAAATTCGAT 777
BSNT_04431___ 781 AATGTGGAACAGCTGACAAATGATCTAACAGATGACGGGTACTATGTCAC 830
.||||.||.|||||.||..||||.||.||.||||||||.|..|||||||.
RBAM_027340__ 778 CATGTCGATCAGCTTACCCATGACCTCACGGATGACGGCTTTTATGTCAG 827
BSNT_04431___ 831 ATCAGTGACTACTGAACTTGAGGGAGCCAATACCTTCTTCATGGTCTTCA 880
|||.||.|||||.||.||..||||.|.|||.|||||.|||.|.|||||.|
RBAM_027340__ 828 ATCTGTCACTACCGAGCTGAAGGGCGTCAACACCTTTTTCCTCGTCTTTA 877
BSNT_04431___ 881 AAATCGGACTGATCTTTGTCGGATGTATCGCAGTTATCATTTCAGCGATC 930
|||||||.||||||||||||||.|.||||||.||..|.|||||.||.|||
RBAM_027340__ 878 AAATCGGCCTGATCTTTGTCGGCTTTATCGCCGTCGTGATTTCTGCCATC 927
BSNT_04431___ 931 GGCATTTTTAACACGATGACGATGGCGGTGACAGAGAGAACGCAAGAGAT 980
||.|||||.||.||||||||||||||||||||.||..|||||||.||.||
RBAM_027340__ 928 GGTATTTTCAATACGATGACGATGGCGGTGACGGAACGAACGCAGGAAAT 977
BSNT_04431___ 981 CGGCATTATGAAAGCGATTGGGGCGAGCCCGTCAATCATTCGCCGAATGT 1030
|||.|||||||||||||||||.||.||||||||.|||||.|||.||||||
RBAM_027340__ 978 CGGGATTATGAAAGCGATTGGCGCAAGCCCGTCCATCATCCGCAGAATGT 1027
BSNT_04431___ 1031 TCTTGATGGAAAGCGCGTATATCGGAATTTTAGGCTGTGTGATTGGGATT 1080
||.|||||||||||||.||||||||.||.|||||.|.|||.||.||||||
RBAM_027340__ 1028 TCCTGATGGAAAGCGCCTATATCGGGATATTAGGTTCTGTCATCGGGATT 1077
BSNT_04431___ 1081 ATCATTTCTTACGGCGTGAGCTACCTT---GTCAACCTGGCCGTTCCGAT 1127
||||||||||||||.|||||.| || |||||.|||||.||.|||.|
RBAM_027340__ 1078 ATCATTTCTTACGGAGTGAGTT---TTGCCGTCAATCTGGCTGTGCCGGT 1124
BSNT_04431___ 1128 GATTCTTGCGGCTACAAGCGGAAG----------CGATGCGGGCGA-CTT 1166
.||| ||| .||||||.|| ||..||.|..|| |||
RBAM_027340__ 1125 TATT-TTG------AAAGCGGTAGGGGGAAACACCGGAGCCGAAGATCTT 1167
BSNT_04431___ 1167 GAATTACACATTCTCCTACATCCCGGCGAGTC---TTGTGATCATTGCCG 1213
.||||.||.||||||||.||||||...||.| |||||||| ||.|
RBAM_027340__ 1168 -CATTATACCTTCTCCTATATCCCGCTCAGCCTCGTTGTGATC---GCAG 1213
BSNT_04431___ 1214 TTGTGATTTGCGGAGGGGTCGCAGTCATTTCCGGAATGAACCCGGCTAGA 1263
||||.|||||.|..||||||||.||.||||||||.|||||.|||||..|.
RBAM_027340__ 1214 TTGTCATTTGTGCGGGGGTCGCGGTGATTTCCGGTATGAATCCGGCCCGC 1263
BSNT_04431___ 1264 AAAGCAACAAAAACCAACGTGCTGACAGCGTTGAGAAGAGAACTATAA 1311
|||||.||||||||||||||.|||||.||.||.|||||||||||.|||
RBAM_027340__ 1264 AAAGCGACAAAAACCAACGTTCTGACTGCATTAAGAAGAGAACTGTAA 1311
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