Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04428 and RBAM_027320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:54
# Commandline: needle
# -asequence dna-align/BSNT_04428___ytsB.1.9828.seq
# -bsequence dna-align/RBAM_027320___bceS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04428___ytsB-RBAM_027320___bceS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04428___ytsB-RBAM_027320___bceS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04428___ytsB
# 2: RBAM_027320___bceS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1071
# Identity: 721/1071 (67.3%)
# Similarity: 721/1071 (67.3%)
# Gaps: 132/1071 (12.3%)
# Score: 2258.5
#
#
#=======================================
BSNT_04428___ 1 ATGATTAAAGCATTCCTTATCGAAAGGCGGAGCTGGATTGCCGCT-TTTT 49
|||||||||.||||.||..|||||||...|||||||||.| ||.| |||.
RBAM_027320__ 1 ATGATTAAATCATTTCTGCTCGAAAGAAAGAGCTGGATCG-CGATGTTTC 49
BSNT_04428___ 50 TGTTTCAGCAGGCTTTGATGCTGTTCATTGTTTTTG---------TCGAT 90
|.||||||||||||.||.|.| |||||| |.|||
RBAM_027320__ 50 TTTTTCAGCAGGCTGTGCTCC---------TTTTTGCGGCATATATTGAT 90
BSNT_04428___ 91 CCTTCCATATCATTTGGGAAT-----GTACTTTATATGGTGTATTTGT-G 134
||.||.||..|.||| | ||.||.|||.|.||.||..||| |
RBAM_027320__ 91 CCGTCTATTCCGTTT-----TTTTCGGTGCTGTATTTCGTTTACCTGTCG 135
BSNT_04428___ 135 CATTTTGTTTTTTATCATATTCCTTTGGTTCCGCTATCGGAAAGAAACAG 184
|.|.||| |.|||.|..||||.||.|.||||||||||||.|||||.||.|
RBAM_027320__ 136 CTTCTTG-TGTTTCTTGTATTTCTCTTGTTCCGCTATCGTAAAGAGACCG 184
BSNT_04428___ 185 CGTTTTATAAAAGCTTGAAAACA-TGGGAGAACAATCTCG--ATGTGACA 231
|.|.|||||||||||| ||.|.| |||||...||||.|.| ||||...|
RBAM_027320__ 185 CCTATTATAAAAGCTT-AAGAGAGTGGGACGCCAATTTAGACATGTCTTA 233
BSNT_04428___ 232 GCCATAAATGAACCGGAAACGCCGTTTGAAGCAATGGTTGAAAGAAGCAT 281
||.|||| |..||.||.|..||||||||..|.||.||||||..||||||
RBAM_027320__ 234 -CCTTAAA-GCGCCTGACAGTCCGTTTGAGTCTATCGTTGAAGAAAGCAT 281
BSNT_04428___ 282 TGCCGGGCAAACAGAACACTTGAAGCAGACCGCAGCACGGCATCGCTT-- 329
||..|||||.|||||.||.|| |||.|.| ||| ||.|||
RBAM_027320__ 282 TGAAGGGCAGACAGAGCAGTT-AAGAAAA----AGC------TCACTTGA 320
BSNT_04428___ 330 ---------AGCATTGGAAAATGAAAAAGATGAGCTGATGGCATGGATCC 370
.||.|..||..|||||||.||.||.||||||.|.|||||.|
RBAM_027320__ 321 TCTTCAGGCGGCGTCAGAGCATGAAAAGGACGATCTGATGTCGTGGATTC 370
BSNT_04428___ 371 ATGAGGTCAAAACTCCATTAACAGCGATGCATTTAATCATTGATAGAATG 420
|.|||||||||||.||..|.||||||||||||.|.||.||.||..|..|.
RBAM_027320__ 371 ACGAGGTCAAAACACCGCTGACAGCGATGCATCTCATGATCGAGCGCCTT 420
BSNT_04428___ 421 GAAGAAAAAGCACTGAAATCCC---AGCTGTCATATGAATGGCTGCGAAT 467
||.|||.|..|.||.|||.||| .|||| ||||||||||||||.||
RBAM_027320__ 421 GATGAACAGCCGCTCAAAGCCCCTTTGCTG---TATGAATGGCTGCGGAT 467
BSNT_04428___ 468 TCACCTGCTTCTTGATCAGCAGCTTCATCAAAAACGGATATCATTTATTG 517
|||||..|||||.||.||||||||||||||.|||||..|.||.|||||||
RBAM_027320__ 468 TCACCATCTTCTGGACCAGCAGCTTCATCAGAAACGATTGTCCTTTATTG 517
BSNT_04428___ 518 AAAACGATCTGTCTGTAGAATT------CATTCAGCTTCAG-CCTTTGAT 560
||||.|||.|.|| ||| |||||||| |||| ||..|..|
RBAM_027320__ 518 AAAATGATTTATC------ATTCCAGCGCATTCAGC-TCAGACCGCTCGT 560
BSNT_04428___ 561 CTTTAAAGAAATCAAAGATTTACAATCGTGGTGTATCCAAAAAGGGATCG 610
.||.||||||||.|||.||.|.|||||.||||||||.|||||||||||||
RBAM_027320__ 561 TTTCAAAGAAATTAAAAATCTGCAATCTTGGTGTATACAAAAAGGGATCG 610
BSNT_04428___ 611 GTTTTGACATAAAGCTCGAGGCCAAAGAAGTGCTGAGCGATGCAAAATGG 660
|.||||||||..||||.||..|...|||.||.|..||.||.|.|||||||
RBAM_027320__ 611 GGTTTGACATTCAGCTTGATTCACCAGACGTTCACAGTGACGGAAAATGG 660
BSNT_04428___ 661 CTGGCGTTTATCATCAGGCAGCTGCTGACAAACGCGGTGAAATACAGCGA 710
||..|.||.|||||||||||||||.|.|..||.||.||.||||||||.||
RBAM_027320__ 661 CTTTCCTTCATCATCAGGCAGCTGTTAAGCAATGCCGTCAAATACAGTGA 710
BSNT_04428___ 711 AGCCTCTGAAAT---CGAGATCAAAAGCTTTCAAAAAGGGGAACAGACGC 757
.||...|||.|| || |.|||||||.|.||.|| |||.|.||
RBAM_027320__ 711 GGCGGATGACATTACCG---TAAAAAGCTATGAACAA----AACGGCCG- 752
BSNT_04428___ 758 AGCTCCAAGT-------GAAGGACTGTGGCAGGGGCATTGATCCAAAAGA 800
|.|.||.|| ||| |||.|.||||..|||||.||.||.|||||
RBAM_027320__ 753 -GGTGCATGTGGATATCGAA-GACCGCGGCATCGGCATCGAGCCCAAAGA 800
BSNT_04428___ 801 TGTACCGCGTATTTTTGATAAAGGG-TTTACATCCACAACGGATCA-CCA 848
|.|.|||||.|||||||| |||||| |||||.||.|| .||.||.| .|.
RBAM_027320__ 801 TCTTCCGCGCATTTTTGA-AAAGGGATTTACCTCGAC-GCGAATGAGGCG 848
BSNT_04428___ 849 TGATCAAGCGTCAACTGGCATGGGGCTGTACTTGGCAAAAAAAGCAGCGG 898
||||||.||||||||.||.|||||.|||||.|||||..|||||||.||||
RBAM_027320__ 849 TGATCACGCGTCAACGGGGATGGGCCTGTATTTGGCTCAAAAAGCCGCGG 898
BSNT_04428___ 899 CGCCG-TTATTGATCCATATTGAT----GT------TGAGTCGGAGTTTG 937
|.||| ||.|| ||||| ||| || ||||.||||
RBAM_027320__ 899 CTCCGCTTCTT-ATCCA----GATCAGCGTGCGCTCTGAGCCGGA----- 938
BSNT_04428___ 938 GTGCGGGAACAGTTTTTACATTAACCTTTCCAATACGGAATCAAT---TT 984
..|| ||.||.||||||||.||....|||||.|.||.||| |.|| .|
RBAM_027320__ 939 AAGC-GGCACGGTTTTTACCTTGGTGTTTCCGAAACAGAA-CGATGCCGT 986
BSNT_04428___ 985 GAACATGTCATAAGCGTGTGA 1005
.|.||||| |.|||||||||
RBAM_027320__ 987 CAGCATGT--TCAGCGTGTGA 1005
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