Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04427 and RBAM_027310

See Amino acid alignment / Visit BSNT_04427 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:54
# Commandline: needle
#    -asequence dna-align/BSNT_04427___ytsC.1.9828.seq
#    -bsequence dna-align/RBAM_027310___bceA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04427___ytsC-RBAM_027310___bceA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04427___ytsC-RBAM_027310___bceA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04427___ytsC
# 2: RBAM_027310___bceA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 777
# Identity:     581/777 (74.8%)
# Similarity:   581/777 (74.8%)
# Gaps:          39/777 ( 5.0%)
# Score: 2139.0
# 
#
#=======================================

BSNT_04427___      1 ATGGTGATTTTAGAAGCGAATAAAATTCGAAAAAGTTATGGAAACAAGCT     50
                        .|||||||||||||....||.||.|.||||||.||.|||||||||||
RBAM_027310__      1 ---ATGATTTTAGAAGCAGGCAATATCCAAAAAAGCTACGGAAACAAGCT     47

BSNT_04427___     51 GAATAAACAGGAAGTGCTGAAGGGCATCGATATTCACATTGA-AAAGGGC     99
                     |||||||||.||.||||||||.||.||.|||.||||.|||.| |||||| 
RBAM_027310__     48 GAATAAACAAGAGGTGCTGAAAGGAATTGATCTTCAGATTCACAAAGGG-     96

BSNT_04427___    100 GAATTCGTCAGTATTATGGGGGCTTCCGGGTCGGGAAAAACCAC---TTT    146
                     |||||||||||.||||||||..|.||.||.||.||.|||||.||   |||
RBAM_027310__     97 GAATTCGTCAGCATTATGGGCCCGTCGGGATCAGGGAAAACGACCCTTTT    146

BSNT_04427___    147 GCTCAACGTTCTGTCCTCAATCGATCAGGTCAGTCAC-GGAACCATTCAT    195
                     |   ||.||.||.|||||.||.|||.|.||.|| |.| ||.||||||.|.
RBAM_027310__    147 G---AATGTGCTTTCCTCCATTGATAAAGTGAG-CGCGGGCACCATTAAA    192

BSNT_04427___    196 ATTAAT-----GGAAATGACATGACGGCTATGAAGGAAAAGCAGCTGGCT    240
                     .|.|||     |||.||.||||     |.|||||.|||||||||||.||.
RBAM_027310__    193 CTGAATGAGACGGAGATTACAT-----CCATGAAAGAAAAGCAGCTTGCC    237

BSNT_04427___    241 GAATTTAGAAAACAGCATTTAGGCTTTATCTTTCAGGATTACAATTTGTT    290
                     |||||.|||||||.||||.|.||||||||.|||||||||||.|||||.||
RBAM_027310__    238 GAATTCAGAAAACGGCATCTCGGCTTTATTTTTCAGGATTATAATTTATT    287

BSNT_04427___    291 AGACACATTGACAGTGAAAGAGAATATCCTTCTGCCTTTATCGATCACGA    340
                     .|||||..||||.|||||.||.||.||.||.|||||.|||||.||.||||
RBAM_027310__    288 GGACACCCTGACCGTGAAGGAAAACATACTCCTGCCGTTATCCATTACGA    337

BSNT_04427___    341 AACTATCAAAAAAGGAAGCCAATC-GCAAGTTTGAGGAAGTTGCAAAGGA    389
                     ||.|.||.||.||.||.||..|.| ||.| ||||..||....|||.||||
RBAM_027310__    338 AAATGTCTAAGAAAGAGGCGGACCTGCGA-TTTGCCGAGACGGCAGAGGA    386

BSNT_04427___    390 ACTGGGAATATATGAATTGCGGGATAAGTACCCGAATGAAATTTCCGGCG    439
                     .||.||.||.|||||.|||||..|||||||.||||.||||||||||||||
RBAM_027310__    387 GCTTGGGATCTATGATTTGCGACATAAGTATCCGAGTGAAATTTCCGGCG    436

BSNT_04427___    440 GCCAGAAGCAGAGAACATCCGCTGGAAGAGCGTTTATTCATGACCCGAGC    489
                     |.||.||.|||.|.||.||.||.|.||||||..|||||||.||.|||.||
RBAM_027310__    437 GGCAAAAACAGCGGACGTCTGCCGCAAGAGCTGTTATTCACGAGCCGGGC    486

BSNT_04427___    490 ATTATTTTCGCTGATGAACCGACCGGCGCGCTCGATTCGAAATCGGCCTC    539
                     ||||||||.||||||||.||||||||.|||||||||||.||..|.|||..
RBAM_027310__    487 ATTATTTTTGCTGATGAGCCGACCGGAGCGCTCGATTCAAAGGCTGCCAT    536

BSNT_04427___    540 CGATCTATTAAATAAGCTGAGCCAGCTCAATCAAAAACGCAACGCGACGA    589
                     .|||.||.|.|||||.||.||||..||.||||||||||||..|||.||.|
RBAM_027310__    537 GGATTTACTGAATAAACTCAGCCGTCTGAATCAAAAACGCCGCGCCACCA    586

BSNT_04427___    590 TTATTATGGTTACCCATGATCCCGTCGCTGCCAGCTACTGCGGCAGAGTC    639
                     ||.|.|||||.||.||||||||.||.||.||||||||.|.|||..|.||.
RBAM_027310__    587 TTGTGATGGTGACGCATGATCCGGTTGCCGCCAGCTATTCCGGACGTGTG    636

BSNT_04427___    640 ATTTTTATTAAGGACGGGCAAATGTATACACAGCTGAATAAAGGGGGCCA    689
                     .||||.|||||.|||||.|...||||||||||||||||||||||.|||||
RBAM_027310__    637 GTTTTCATTAAAGACGGCCGTGTGTATACACAGCTGAATAAAGGCGGCCA    686

BSNT_04427___    690 GGACAGGCAAACG---TTTTTCCAGGATATTATGAAAACGCAAGGCGTGT    736
                     ||||||   |.||   |||||.|||||||||||||||||||||.|.||.|
RBAM_027310__    687 GGACAG---ACCGGACTTTTTTCAGGATATTATGAAAACGCAAAGTGTAT    733

BSNT_04427___    737 TAGGCGGGGTGCA-GCATGAACATTAA    762
                     |.||||||.|.|| ||||||       
RBAM_027310__    734 TGGGCGGGATTCAGGCATGA-------    753


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04427 and RBAM_027310

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
