Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04417 and RBAM_027250
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:53
# Commandline: needle
# -asequence dna-align/BSNT_04417___leuS.1.9828.seq
# -bsequence dna-align/RBAM_027250___leuS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04417___leuS-RBAM_027250___leuS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04417___leuS-RBAM_027250___leuS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04417___leuS
# 2: RBAM_027250___leuS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2423
# Identity: 1986/2423 (82.0%)
# Similarity: 1986/2423 (82.0%)
# Gaps: 16/2423 ( 0.7%)
# Score: 8162.0
#
#
#=======================================
BSNT_04417___ 1 TTGAGTTTTCAGCACAAAGAGATAGAAAAGAAATGGCAAACATATTGGCT 50
||||||||||||||..||.|.|||||||||||||||||.|..||.|||.|
RBAM_027250__ 1 TTGAGTTTTCAGCATGAAAAAATAGAAAAGAAATGGCAGAATTACTGGTT 50
BSNT_04417___ 51 TGAAAACAAAACATTTGCCACTC-TTGATAATAATGAAAAACAAAAATTC 99
.||..|.|||||.||.||| .|| .|||..|.|||||.||.|..||.||.
RBAM_027250__ 51 GGATCATAAAACGTTCGCC-GTCAGTGAAGAGAATGACAAGCCGAAGTTT 99
BSNT_04417___ 100 TACGCGCTGGACATGTTTCCTTACCCGTCTGGAGCTGGGTTGCACGTCGG 149
||||||||.||||||||.||.||.||.||.|||||.||..|.||.|||||
RBAM_027250__ 100 TACGCGCTTGACATGTTCCCGTATCCTTCAGGAGCCGGCCTTCATGTCGG 149
BSNT_04417___ 150 CCATCCTGAAGGATACACAGCTACGGATATTCTGTCCCGCATGAAGCGCA 199
.|||||.|||||.||.||.||.||.|||||.||.||.|||||||..||||
RBAM_027250__ 150 ACATCCGGAAGGCTATACGGCAACCGATATCCTTTCGCGCATGAGACGCA 199
BSNT_04417___ 200 TGCAGGGCTATGATGTCCTTCATCCAATGGGCTGGGACGCATTCGGCCTG 249
||||.||.||..||||.||||||||.|||||.||||||||.|||||.||.
RBAM_027250__ 200 TGCAAGGATACAATGTGCTTCATCCGATGGGATGGGACGCGTTCGGGCTT 249
BSNT_04417___ 250 CCAGCTGAACAATACGCGCTTGACACAGGGAACGACCCCGCTGTGTTTAC 299
||.||.||.|||||||||||||||||.|||||.||.||.||.|.|||.||
RBAM_027250__ 250 CCTGCCGAGCAATACGCGCTTGACACGGGGAATGATCCGGCCGAGTTCAC 299
BSNT_04417___ 300 GAAGCAGAATATTGATAACTTCCGCCGCCAAATTCAAGCGCTTGGCTTCT 349
.||.||.|||||.|||||.|||||||||||.||||||.||||.||.||.|
RBAM_027250__ 300 AAAACAAAATATAGATAATTTCCGCCGCCAGATTCAATCGCTCGGATTTT 349
BSNT_04417___ 350 CATATGACTGGGATCGCGAAATCAATACGACTGACCCTGAATACTATAAA 399
|||||||.||||||||.|||||||||||||||||.||.||.||.||.||.
RBAM_027250__ 350 CATATGATTGGGATCGTGAAATCAATACGACTGATCCGGACTATTACAAG 399
BSNT_04417___ 400 TGGACGCAATGGATTTTCTTAAAGCTATACGAAAAAGGCCTTGCTTACGT 449
||||||||.|||||.|||...|||||.|||||||||||.||.||||||||
RBAM_027250__ 400 TGGACGCAGTGGATCTTCACCAAGCTGTACGAAAAAGGGCTCGCTTACGT 449
BSNT_04417___ 450 TGACGAAGTGCCTGTAAACTGGTGCCCTGCGCTCGGTACTGTTCTTGCCA 499
.|||||||||||.||.|||||||||||.||||||||.||.||.|||||.|
RBAM_027250__ 450 AGACGAAGTGCCGGTCAACTGGTGCCCGGCGCTCGGAACGGTGCTTGCGA 499
BSNT_04417___ 500 ACGAAGAAGTCATTGACGGCAAGAGCGAACGCGGCGGCCATCCGGTAGAG 549
||||||||||||||||||||||.|||||.||.||||||||||||||.||.
RBAM_027250__ 500 ACGAAGAAGTCATTGACGGCAAAAGCGAGCGGGGCGGCCATCCGGTTGAA 549
BSNT_04417___ 550 AGACGCCCAATGAAGCAGTGGATGCTGAAAATCACCGCTTATGCGGACAG 599
.|.|||||.||||..||.||||||||||||||||||||||||||||||||
RBAM_027250__ 550 CGCCGCCCGATGAGACAATGGATGCTGAAAATCACCGCTTATGCGGACAG 599
BSNT_04417___ 600 GCTCCTTGAGGACTTGGAAGAGCTTGATTGGCCGGAAAGCATTAAAGATA 649
|||.|||||.||.||.|||||.|||||.||||||||||||||||||||.|
RBAM_027250__ 600 GCTTCTTGAAGATTTAGAAGACCTTGACTGGCCGGAAAGCATTAAAGACA 649
BSNT_04417___ 650 TGCAGCGCAACTGGATCGGCCGTTCGGAAGGCGCTCACGTTCATTTTGCT 699
|||||||||||||||||||.||.||.||||||||..||||.|||||.||.
RBAM_027250__ 650 TGCAGCGCAACTGGATCGGACGCTCAGAAGGCGCAAACGTGCATTTCGCG 699
BSNT_04417___ 700 ATAGATGGACA-TGATGATTCCTTTACGGTGTTTACAACAAGACCAGATA 748
||.||.|| || ||||||..|.|||||.||||||||.||||||||.||.|
RBAM_027250__ 700 ATCGACGG-CACTGATGACACGTTTACCGTGTTTACGACAAGACCGGACA 748
BSNT_04417___ 749 CGCTGTTTGGCGCTACATACACTGTCCTTGCCCCGGAACACGCAT----T 794
|||||||.|||||..|.||..|.||.||.||.||.|| |||| |
RBAM_027250__ 749 CGCTGTTCGGCGCGGCTTATGCCGTACTGGCTCCTGA----GCATGAGCT 794
BSNT_04417___ 795 GGTGGAAAACATCACAACGGCAGAGCAAAAAGAAGCTGTTGAAGCTTATA 844
.|||||...||||||.|||.|.||.|||||||||||.||.||.||||||.
RBAM_027250__ 795 TGTGGAGGCCATCACGACGCCTGAACAAAAAGAAGCGGTAGACGCTTATG 844
BSNT_04417___ 845 TCAAAGAAATTCAATCAAAGAGTGACCTAGAACGCACAGATCTTGCGAAA 894
|.||||||.||||..|.||.||||||||.|||||.||.||||||||||||
RBAM_027250__ 845 TTAAAGAAGTTCAGGCGAAAAGTGACCTGGAACGGACGGATCTTGCGAAA 894
BSNT_04417___ 895 ACAAAGACAGGCGTATTTACAGGAGCGTATGCGATCAATCCTGTAAACGG 944
|||||.||.|||||.||.||.||.||.|||||..|.||.||||.||||||
RBAM_027250__ 895 ACAAAAACGGGCGTCTTCACGGGCGCATATGCCGTAAACCCTGCAAACGG 944
BSNT_04417___ 945 AGAAAAACTGCCGATTTGGATTGCGGATTATGTTCTTGCATCATACGGAA 994
.|||||.||||||||.|||||.|||||||||||.||.||.||.|||||||
RBAM_027250__ 945 GGAAAAGCTGCCGATCTGGATAGCGGATTATGTCCTCGCCTCTTACGGAA 994
BSNT_04417___ 995 CAGGTGCTGTCATGGCAGTTCCTGGACACGATGAGCGTGATTTTGAATTC 1044
||||.|||||.|||||.||.||.|..||.|||||.|||||||||||||||
RBAM_027250__ 995 CAGGCGCTGTAATGGCCGTGCCGGCGCATGATGAACGTGATTTTGAATTC 1044
BSNT_04417___ 1045 GCCAAAACATTCGGCCTTCCGGTGAAGGAAGTCGTAAAAGGCGGGAACGT 1094
||.|||...|||.||||.||.||.||.|||||||||||||||||.|||..
RBAM_027250__ 1045 GCAAAAGTGTTCAGCCTGCCTGTCAAAGAAGTCGTAAAAGGCGGAAACAC 1094
BSNT_04417___ 1095 TGAGGAAGCAGCCTATACTGGCGACGGCGAGCACGTGAACTCTGATTTCC 1144
.||.||||.|||.||.||.||.|||||.|||||.||.||.||.|..||.|
RBAM_027250__ 1095 GGAAGAAGAAGCGTACACGGGGGACGGAGAGCATGTCAATTCCGGCTTTC 1144
BSNT_04417___ 1145 TGAACGGCCTTCACAAACAGGAAGCGATTGAGAAAGTGATCGCTTGGCTG 1194
|||||||.||..|.|||..||||||||||||.|||.|||||||.|||||.
RBAM_027250__ 1145 TGAACGGACTGAAAAAAGCGGAAGCGATTGAAAAAATGATCGCCTGGCTT 1194
BSNT_04417___ 1195 GAAGAAACGAAAAACGGTGAGAAGAAAGTGACGTACCGTCTTCGTGACTG 1244
|||||||||||||||||||||||.||||||||.||||||||.|||||.||
RBAM_027250__ 1195 GAAGAAACGAAAAACGGTGAGAAAAAAGTGACATACCGTCTGCGTGATTG 1244
BSNT_04417___ 1245 GCTCTTCAGCCGCCAGCGTTATTGGGGCGAGCCGATTCCGGTCATTCATT 1294
|||.||||||||||||||.|||||||||||||||||||||||.|||||||
RBAM_027250__ 1245 GCTGTTCAGCCGCCAGCGCTATTGGGGCGAGCCGATTCCGGTTATTCATT 1294
BSNT_04417___ 1295 GGGAAGACGGAACGTCAACAGCTGTCCCTGAAGAGGAGCTGCCGCTGATT 1344
||||||||||.|||||||||||.||.||.|..||.|||||||||||||||
RBAM_027250__ 1295 GGGAAGACGGCACGTCAACAGCCGTTCCGGCGGAAGAGCTGCCGCTGATT 1344
BSNT_04417___ 1345 TTGCCGAAAACGGATGAAATCAAACCGAGCGGAACGGGCGAATCACCGCT 1394
.||||||||||.|||||.|||||||||||||||||.||.|||||||||||
RBAM_027250__ 1345 CTGCCGAAAACCGATGAGATCAAACCGAGCGGAACAGGTGAATCACCGCT 1394
BSNT_04417___ 1395 TGCGAACATTAAAGAGTGGGTGGAAGTCACAGACCCTGAGACAGGGAAAA 1444
|||.||||||||||||||||||||||||||.||.|||||.||.||.||||
RBAM_027250__ 1395 TGCCAACATTAAAGAGTGGGTGGAAGTCACTGATCCTGAAACGGGCAAAA 1444
BSNT_04417___ 1445 AAGGAAGAAGAGAAACGAATACAATGCCGCAATGGGCGGGAAGCTGCTGG 1494
||||.||||||||||||||.||.|||||||||||||||||||||||||||
RBAM_027250__ 1445 AAGGCAGAAGAGAAACGAACACGATGCCGCAATGGGCGGGAAGCTGCTGG 1494
BSNT_04417___ 1495 TATTTCTTGCGCTATATTGATCCGCACAATCCGGATCAGCTGGCATCACC 1544
||||||.|.||||.|||.||.|||.|.||||||||||||||.||.|||||
RBAM_027250__ 1495 TATTTCCTCCGCTTTATCGACCCGAAAAATCCGGATCAGCTCGCTTCACC 1544
BSNT_04417___ 1545 AGAAAAATTGGAAAAATGGCTTCCGGTCGATATGTATATCGGCGGTGCAG 1594
.||.|||.||||.||||||||.||.||.|||||.||.|||||.||.||.|
RBAM_027250__ 1545 TGAGAAACTGGATAAATGGCTGCCCGTTGATATTTACATCGGAGGAGCGG 1594
BSNT_04417___ 1595 AGCATGCCGTGCTTCACCTTCTGTATGCCCGCTTCTGGCATAAGTTCCTT 1644
|||||||||||||||||||||||||.||.||.|||||||||||.|||||.
RBAM_027250__ 1595 AGCATGCCGTGCTTCACCTTCTGTACGCGCGTTTCTGGCATAAATTCCTC 1644
BSNT_04417___ 1645 TATGATATCGGCGTAGTGCCGACGAAAGAACCGTTCCAAAAGCTGTACAA 1694
||.||||||||.||.||||||||||||||||||||||||||||||||.||
RBAM_027250__ 1645 TACGATATCGGTGTCGTGCCGACGAAAGAACCGTTCCAAAAGCTGTATAA 1694
BSNT_04417___ 1695 CCAAGGAATGATTCTCGGTGAAAATAACGAAAAAATGAGTAAATCTAAAG 1744
||||||||||||||||||.||||||||.|||||||||||||||||....|
RBAM_027250__ 1695 CCAAGGAATGATTCTCGGGGAAAATAATGAAAAAATGAGTAAATCCCGCG 1744
BSNT_04417___ 1745 GGAACGTTGTCAACCCTGACGAAATCGTGGCCTCTCACGGTGCTGATACG 1794
|.|||||.|||||.||.||.|||||.|||||.||||||||.||.||||||
RBAM_027250__ 1745 GAAACGTCGTCAATCCGGATGAAATTGTGGCGTCTCACGGAGCAGATACG 1794
BSNT_04417___ 1795 CTGAGATTGTACGAAATGTTCATGGGACCTCTTGATGCTTCAATCGCCTG 1844
||..|..|||||||||||||.|||||.||.||||||||.||.||||||||
RBAM_027250__ 1795 CTCCGCCTGTACGAAATGTTTATGGGGCCGCTTGATGCATCTATCGCCTG 1844
BSNT_04417___ 1845 GTCTGAATCAGGATTAGACGGTGCGCGCCGTTTCCTTGACCGTGTATGGC 1894
||||||||||||..|.|||||.||||||||.|||||||||||.|||||||
RBAM_027250__ 1845 GTCTGAATCAGGTCTTGACGGAGCGCGCCGCTTCCTTGACCGCGTATGGC 1894
BSNT_04417___ 1895 GCCTATTTATTGAAGACAGCGGTGAGCTTAATGGAAAAATCGTTGAAGGC 1944
|..|.|||||.||.||.|.|||.|||||.|..||.|||.|....||||||
RBAM_027250__ 1895 GTTTGTTTATCGAGGAAAACGGCGAGCTGACGGGCAAAGTGACAGAAGGC 1944
BSNT_04417___ 1945 GCTGGTGAAACATTGGAGCGCGTCTATCATGAAACGGTTATGAAAGTCAC 1994
||.||.|||||..|.|||||||||||||||||||||||.||||||||.||
RBAM_027250__ 1945 GCAGGCGAAACTCTTGAGCGCGTCTATCATGAAACGGTCATGAAAGTGAC 1994
BSNT_04417___ 1995 AGACCATTATGAAGGCCTTCGTTTCAACACAGGTATTTCCCAGCTGATGG 2044
|||..|.|..||||.|||||||||.|||||.||.|||||.||||||||||
RBAM_027250__ 1995 AGAAAACTTCGAAGCCCTTCGTTTTAACACGGGCATTTCTCAGCTGATGG 2044
BSNT_04417___ 2045 TCTTTATTAATGAAGCTTATAAAGCAACAGAACTGCCGAAAGAATATATG 2094
||||.||||||||||||||.|||||.|..||||||||||.|||||||||.
RBAM_027250__ 2045 TCTTCATTAATGAAGCTTACAAAGCGAATGAACTGCCGAGAGAATATATC 2094
BSNT_04417___ 2095 GAAGGCTTCGTGAAGCTTCTTTCTCCTGTCGCGCCACACTTAGCGGAAGA 2144
|||||.||.||||||||.|||||||||.|.|||||.||.||.||||||||
RBAM_027250__ 2095 GAAGGTTTTGTGAAGCTGCTTTCTCCTATTGCGCCGCATTTGGCGGAAGA 2144
BSNT_04417___ 2145 GCTTTGGGAGAAGCTTGGCCATTCCGGCACAATTGCCTACGAAGCTTGGC 2194
.||.|||||.||.||.|||||....||..|.|||||.|||||.|||||||
RBAM_027250__ 2145 ACTGTGGGAAAAACTCGGCCACGAAGGTTCGATTGCATACGAGGCTTGGC 2194
BSNT_04417___ 2195 CTGTATATGATGAAACAAAACTTGTGGATGATGAAGTTGAAATCGTTGTT 2244
|||..|||||.|||.|||||||.|||||.||||||||.||||||||.||.
RBAM_027250__ 2195 CTGCTTATGACGAATCAAAACTGGTGGACGATGAAGTGGAAATCGTCGTC 2244
BSNT_04417___ 2245 CAGCTGAACGGAAAAGTAAAAGCGAAATTACAGGTTCCTGCCGATGCAAC 2294
||||||||||||||||||||||||||||||..||||||.||.||||| .
RBAM_027250__ 2245 CAGCTGAACGGAAAAGTAAAAGCGAAATTAATGGTTCCGGCTGATGC--T 2292
BSNT_04417___ 2295 GAAAGAACAGC--TGGAACAGCTTGCTCAAGCAGATGAAAAGGTCAAAGA 2342
||.|.|.|||| |.||||||||.||.|||||.||.|||||.||.|||||
RBAM_027250__ 2293 GATAAAGCAGCGTTAGAACAGCTCGCACAAGCTGACGAAAAAGTAAAAGA 2342
BSNT_04417___ 2343 GCAGCTTGAAGGCAAAACGATTCGGAAAATCATCGCGGTGCCTGGCACGC 2392
||||||||||||.||||||||.||.||||||||.||.||.||.||||.||
RBAM_027250__ 2343 GCAGCTTGAAGGAAAAACGATCCGAAAAATCATTGCCGTACCGGGCAAGC 2392
BSNT_04417___ 2393 TTGTCAATATTGTGGCAAACTAA 2415
||||||||||.||||||||||.|
RBAM_027250__ 2393 TTGTCAATATCGTGGCAAACTGA 2415
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