Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04558 and RBAM_027230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:00
# Commandline: needle
# -asequence dna-align/BSNT_04558___yuaI.1.9828.seq
# -bsequence dna-align/RBAM_027230.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04558___yuaI-RBAM_027230.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04558___yuaI-RBAM_027230.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04558___yuaI
# 2: RBAM_027230
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 606
# Identity: 293/606 (48.3%)
# Similarity: 293/606 (48.3%)
# Gaps: 213/606 (35.1%)
# Score: 502.5
#
#
#=======================================
BSNT_04558___ 1 ATGGTAACTGTACG-TGAAGCGAAGTTAGAGGATATAAAGGACATTGCAA 49
||| |.|.|..|| ||||...|| |.|||||.|| |.
RBAM_027230 1 ATG--ATCCGCGCGATGAAAACAA-----ACGATATCAA---------AC 34
BSNT_04558___ 50 AAGT---GCATGT---AGA---CAGCTGGAGGACAACATAC-CACGAA-- 87
|.|| |||.|| ||| .|||||| ||.||||| .|.|||
RBAM_027230 35 AGGTCCGGCAAGTCGCAGAACGAAGCTGG----CATCATACGTATGAAGG 80
BSNT_04558___ 88 -ATTATCCC------GATT---GATTATTT-----AAACAGCCTGAACTA 122
|||||.|| .||| |||.|.|| ||.|.|| |||
RBAM_027230 81 GATTATTCCCAGACACATTCAGGATCAGTTTCTCGAATCCGC-----CTA 125
BSNT_04558___ 123 TAAGGAATTTGAAGACAAATGGAAAAGTC-GCTCGTTAAAAGGAGTATTT 171
|.||| ||..||.| |||| ||.|.| ||||.| |.|.|.|.|
RBAM_027230 126 TCAGG-ATGAGATG----ATGG-AACGCCGGCTCTT-----GCATTCTCT 164
BSNT_04558___ 172 GTTGCT------CAGGACGAAATGGATTCAGTATTCGGCTTTGCTTCATT 215
||| || || ||.|||..||....|||..||||.|||| ||..
RBAM_027230 165 GTT-CTTTGTGGCA-GAAGAAGAGGGGCGAGTGCTCGGTTTTG---CAAA 209
BSNT_04558___ 216 TG-GACCTATTCGCTCTGAACAAGAAGGCTATGACGGCGAGTTATACGCT 264
|| .||| .||.| |.||.||||.||..||| || |||.|...|||.
RBAM_027230 210 TGCCACC---CCGGT-TCAAAAAGACGGAAATG-CG--GAGCTGACCGCC 252
BSNT_04558___ 265 ATTTATCTTCTGGA---AGAGCGCCAGCGGCAA--GGTGCAGGCAGGGCG 309
||.|||.|| || .||..|||| ||.|| ||...|||||.|||.
RBAM_027230 253 ATCTATATT---GACCCGGATTGCCA--GGGAAGCGGGATAGGCACGGCA 297
BSNT_04558___ 310 CT-CTTA------GCAAAAGG------AGCGGAGTATTTGCTTCAACATG 346
|| |||| |||..||| .||||.|| ||.|..
RBAM_027230 298 CTCCTTAAAGAATGCATCAGGCAGTCCGGCGGGGT---------AAAAAA 338
BSNT_04558___ 347 GCTTTTCAAGTATGTTTGTTTGGGTTATTGAGCAGAA------------- 383
|||| |||||...| ||||||
RBAM_027230 339 GCTT------TATGTCCAT------------GCAGAAAAAGAGAACCGCA 370
BSNT_04558___ 384 -TCCCTCGATTAT-ATTTTATCAGGCCTATTCACCTGAAAGAGTAGCGGA 431
|.|| |||| .||||||||.|| |||||.||..|...
RBAM_027230 371 TTGCC----TTATCCTTTTATCAAGC----------GAAAGGGTTTCAAT 406
BSNT_04558___ 432 GGACAACTTTGAAATTGCCGGAGTAAGGCTGAAAGAAGTAGGTCTTGGCT 481
||..| |.||||.||| |||||
RBAM_027230 407 GGGTA--TGTGAATTTG---------------AAGAA------------- 426
BSNT_04558___ 482 GGCCGGATCTTTCAG------CTTTAAAAAC------AC---TTCTTAAC 516
|||.||..|| |||||.|.|| || |.||.|||
RBAM_027230 427 -----GATTTTAAAGGACACACTTTACAGACGGTCAAACTGGTACTGAAC 471
BSNT_04558___ 517 AGATAA 522
|.||||
RBAM_027230 472 ATATAA 477
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