Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04407 and RBAM_027190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:52
# Commandline: needle
# -asequence dna-align/BSNT_04407___msmE.1.9828.seq
# -bsequence dna-align/RBAM_027190___msmE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04407___msmE-RBAM_027190___msmE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04407___msmE-RBAM_027190___msmE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04407___msmE
# 2: RBAM_027190___msmE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1313
# Identity: 955/1313 (72.7%)
# Similarity: 955/1313 (72.7%)
# Gaps: 67/1313 ( 5.1%)
# Score: 3304.0
#
#
#=======================================
BSNT_04407___ 1 ATGAAACACACTT--TTGTTTTATTTCTCTCTCTTATTCTGCTTG-TTCT 47
||||| ||.||| |.|.|||.|||||.|||.|||.| |||.|| |.||
RBAM_027190__ 1 ATGAA--ACGCTTACTGGCTTTGTTTCTTTCTTTTACT-TGCATGATACT 47
BSNT_04407___ 48 GCCCGGGTGTTCAGCAGAGAAAAGCTCAGCAGATACCGCAAAAAAG---- 93
..||||.||.||.|||||..|.||| |...|||.|.|||||
RBAM_027190__ 48 TACCGGCTGCTCGGCAGAACAGAGC------GGCGCCGGAGAAAAGCAGA 91
BSNT_04407___ 94 --ACGTTAACCATTTATTCTACAATGTCAACCGACAGTGAAAGAGATACG 141
||.||.||..|.|||||.||.||.||..|.|||||.|||.|.| .||
RBAM_027190__ 92 AAACATTGACAGTCTATTCCACCATATCCTCAGACAGCGAACGCG--CCG 139
BSNT_04407___ 142 --TTCAGAAAACTGGCGGCAGCATTCGAAAAGGAACA-CAGTGACATTCA 188
||||||||..||||.|...|||||.||||.||||| |.| ||.|||||
RBAM_027190__ 140 TATTCAGAAAGTTGGCTGATTCATTCCAAAAAGAACATCCG-GATATTCA 188
BSNT_04407___ 189 TGTCAGCCTTCATTTCCCAGGCAATGACTATGAAAATATGATGCGTGTCA 238
.||.|.|.||||||||||||||||||||||.||||||||||||.|.||||
RBAM_027190__ 189 AGTAAACGTTCATTTCCCAGGCAATGACTACGAAAATATGATGAGGGTCA 238
BSNT_04407___ 239 GAATGGCGGCCAATGATTTGCCTGATCTATTCGATACACATGGCTGGGGG 288
|||||||.|||..|||..||||.|||||.|||||.|||||.|||||||..
RBAM_027190__ 239 GAATGGCAGCCGGTGACATGCCCGATCTTTTCGACACACACGGCTGGGCC 288
BSNT_04407___ 289 AAAATCAGGTACGGAGAATATACAGCGGATCTCCGGGATATGGAATGGAC 338
||||||.|.||||||||||||||.||.||.|||.|.|..|||...|||||
RBAM_027190__ 289 AAAATCCGCTACGGAGAATATACCGCCGACCTCAGCGGCATGTCTTGGAC 338
BSNT_04407___ 339 TCAAG-ATCTTGATCCCAATTTAAACAGCATCCTCAAAAA---TAAAAGC 384
.||| ..||.|||||.|||||||||||.||.||||||.| .|||.||
RBAM_027190__ 339 -GAAGCGGCTCGATCCGAATTTAAACAGTATGCTCAAAGACGCCAAAGGC 387
BSNT_04407___ 385 GGAAAGGTGTATGCCTATCCGATCAATCAGGCAAAAGACGGTCTGGCGTA 434
.||| |.||.||||..||..|.|||||||||||.|||||.|||||.||
RBAM_027190__ 388 AGAA---TATACGCCTTCCCTCTGAATCAGGCAAAGGACGGACTGGCCTA 434
BSNT_04407___ 435 TAACCGCA-ATATTTTGGACCGTTACGGCATTGCTCCGCCGGAAACCATG 483
.||.|||| || |.|||||....|||||.||....|||||||||||.|||
RBAM_027190__ 435 CAATCGCACAT-TGTTGGAAAAATACGGAATCAAACCGCCGGAAACAATG 483
BSNT_04407___ 484 GATGACTTTATCAAAGCACTGAGAACGATTAAAGAAAAGAGCAAGGGAAG 533
|||||.|||||.||.|||.|||||..||||||||||||.|||...||||
RBAM_027190__ 484 GATGATTTTATGAAGGCATTGAGACAGATTAAAGAAAAAAGCGGCGGAA- 532
BSNT_04407___ 534 CATTGTTCCC-TTCTGGTTTGCCGGCTATGACAAAAGCTCATTCGCTCAA 582
||.|..|||| ||||||||||||||||||||.|||||||||||.||.|||
RBAM_027190__ 533 CAGTCATCCCTTTCTGGTTTGCCGGCTATGAGAAAAGCTCATTTGCCCAA 582
BSNT_04407___ 583 TATTACGACCAATTCGCTACACCTCTTCTCATCACAGACCCTGCCCATAA 632
||||||||.||||||||..||||.||||||||||||||.||.||.||...
RBAM_027190__ 583 TATTACGATCAATTCGCCGCACCGCTTCTCATCACAGATCCCGCACACCG 632
BSNT_04407___ 633 TGAAAAAAAACAGCTCATCAACGGCACTTTTCAATGGAATAAATTTACTT 682
|.|.||||||||.||..|.|||||.||.||.|..||||...|.||.||.|
RBAM_027190__ 633 TTACAAAAAACAACTGTTAAACGGAACCTTCCGCTGGACACACTTCACCT 682
BSNT_04407___ 683 GCTTATC--AAAAATCCTCAAACAAATGCAGAAAGAAAAATTGATCAATA 730
..||||| |.||| ||.|||.|.|||||.||.|||||..||.||||||
RBAM_027190__ 683 ATTTATCTGACAAA--CTGAAAGAGATGCAAAAGGAAAACCTGCTCAATA 730
BSNT_04407___ 731 TCGACGCCGTCACGGCAAAAAAATCACAGCTCATCGAATTAATGGCCCAA 780
|.||.||.||.|||||||||...||.||||||||.|||.|.|||||.|||
RBAM_027190__ 731 TAGATGCTGTGACGGCAAAACGGTCCCAGCTCATTGAACTGATGGCGCAA 780
BSNT_04407___ 781 AACAAAATCGCCTTTACAATGCAAGGCGGCACCCTCGGCCAAGACGTTGC 830
|||||||||||||||||..||||.||||||||.||||||||||||||.||
RBAM_027190__ 781 AACAAAATCGCCTTTACGCTGCAGGGCGGCACTCTCGGCCAAGACGTCGC 830
BSNT_04407___ 831 CCAGATCAACTCTAACGTCGAGGTCGGCATTATCCCGACACCTGCCATCC 880
.||.|||||..|.||.||..|.||||||||.||.|||||.||.|||.|||
RBAM_027190__ 831 TCAAATCAATCCGAAGGTAAAAGTCGGCATCATACCGACCCCGGCCGTCC 880
BSNT_04407___ 881 ATCCCGGTGATGACCCGATATGGATCGGCGGTGAACGCTACACGCTTGCA 930
|....||.||.|..|||.|.||||||||.||.|||||.||||||||.||.
RBAM_027190__ 881 ACAAGGGAGACGCGCCGGTTTGGATCGGAGGCGAACGTTACACGCTGGCG 930
BSNT_04407___ 931 GCATGGAAAGATTCGTCTCAATTAAAAGAGGCAAAAGAATTTATCGCATT 980
||||..||.|||||..|.|...|..||||.||.|||.|.|||||||||||
RBAM_027190__ 931 GCATTCAAGGATTCCCCGCGGCTTGAAGAAGCGAAACAGTTTATCGCATT 980
BSNT_04407___ 981 TATGGCCCG-CCCG-GCCAATGCCAAACAAATGGCTGAAGCCACATCGCT 1028
||||||||| |||| || |.||.|||..|||.||.|||||.||.|||||
RBAM_027190__ 981 TATGGCCCGACCCGAGC--ACGCAAAATCAATTGCCGAAGCGACCTCGCT 1028
BSNT_04407___ 1029 TCCTTCAGGGC--------TGACCAATGTGAAAGCTGATATTTTCTACGC 1070
||| ||| || ||||||.||.|.||.|||||||||||
RBAM_027190__ 1029 TCC-----GGCCGGATTAGTG---AATGTGCAAACGGACATTTTCTACGC 1070
BSNT_04407___ 1071 AAACGATTATGAGCATTATCAAGATGTCAAAGTCGAGCCTTACTTCGACC 1120
|||.||.|||.|||..|||||..||.|.||.||..|||||||.||.||||
RBAM_027190__ 1071 AAATGACTATAAGCGCTATCAGCATATTAAGGTGCAGCCTTATTTTGACC 1120
BSNT_04407___ 1121 GGTTATACTTGCCAAACGGAATGTGGGATGTCCTGGGCACGGTTGGGCAG 1170
|..|.||.|||||.|||||||||||||||||..||||.||.|..||||||
RBAM_027190__ 1121 GCCTTTATTTGCCGAACGGAATGTGGGATGTGATGGGAACAGCCGGGCAG 1170
BSNT_04407___ 1171 GAGCTCGCGGCTGACATTTTGGCGCCTCAAGACATTTC-GCAGAAGCTGG 1219
|||||...|||.||.||.||..|.||....||.||||| || |||.||.|
RBAM_027190__ 1171 GAGCTGATGGCCGATATCTTAACCCCCGCTGAAATTTCAGC-GAAACTCG 1219
BSNT_04407___ 1220 GAAGAGAATATAAACGACTCCGGGAGCAATCGGAAACACAGGGAGCTG-A 1268
|.||.||||||||.||.||||||...|||||.||..|||.|||||||| |
RBAM_027190__ 1220 GCAGGGAATATAAGCGGCTCCGGCTTCAATCTGATTCACGGGGAGCTGAA 1269
BSNT_04407___ 1269 AAACAATGAGTGA 1281
|||.|||||
RBAM_027190__ 1270 AAAGAATGA---- 1278
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