Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04379 and RBAM_027160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:51
# Commandline: needle
# -asequence dna-align/BSNT_04379.1.9828.seq
# -bsequence dna-align/RBAM_027160___opuD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04379-RBAM_027160___opuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04379-RBAM_027160___opuD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04379
# 2: RBAM_027160___opuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1553
# Identity: 522/1553 (33.6%)
# Similarity: 522/1553 (33.6%)
# Gaps: 919/1553 (59.2%)
# Score: 2106.5
#
#
#=======================================
BSNT_04379 1 ATGTTGA-----AACATATATCTAGTGTATTTTGGATTGTGATTGCAATC 45
|||| ||| ||.||.|||||.||||||||||||||||..|||
RBAM_027160__ 1 ---TTGAAGAAGAAC--ATCTCCAGTGTTTTTTGGATTGTGATTGTCATC 45
BSNT_04379 46 ACAGCTGCAGCTGTATTATGGGGTGTTATTTCTCCTGACAGCCTGCAAAA 95
|||||.||.||.||.||||||||.|..||||||||||||||||||||..|
RBAM_027160__ 46 ACAGCCGCTGCGGTTTTATGGGGGGCCATTTCTCCTGACAGCCTGCAGCA 95
BSNT_04379 96 TGTGTCTCAATCGGCACAAGCATTTATTACCGATTCATTTGGTTGGTATT 145
.||..||.|..||||||||..|||||||||.|||||.||.||.|||||||
RBAM_027160__ 96 AGTCACTGATACGGCACAAAAATTTATTACGGATTCTTTCGGCTGGTATT 145
BSNT_04379 146 ATCTTTTAGTTGTCTCTTTGTTTGTCGGGTTTTGTCTCTTTTTGATTTTC 195
||||..|.||.||.|||.|.||||||||.||.|||||||||.|.|||.|.
RBAM_027160__ 146 ATCTGCTGGTCGTTTCTATATTTGTCGGTTTCTGTCTCTTTCTCATTGTG 195
BSNT_04379 196 AGCCCGATCGGAAAAATCAAACTCGGAAAGCCTGATGAAAAACCGGAATT 245
||.||||||||.|.|||.|||||||||||.||.|..||||||||||||||
RBAM_027160__ 196 AGTCCGATCGGCACAATAAAACTCGGAAAACCCGGGGAAAAACCGGAATT 245
BSNT_04379 246 CGGGTTATTATCATGGTTTGCCATGCTGTTCAGCGCAGGCATGGGAATCG 295
|||.|||||||||||||||||||||||.||||||||||||||||||||||
RBAM_027160__ 246 CGGCTTATTATCATGGTTTGCCATGCTTTTCAGCGCAGGCATGGGAATCG 295
BSNT_04379 296 GCTTAGTATTCTACGGTGCGGCTGAACCGATCAGCCATTACGCAATTAGC 345
|.||.|||||.|||||.||.||.||||||||||||||||||||.||.|||
RBAM_027160__ 296 GTTTGGTATTTTACGGGGCTGCGGAACCGATCAGCCATTACGCCATCAGC 345
BSNT_04379 346 TCTCCATCAGGTGAAACAGAAACCCCCCAAGCCTTCAGAGATGCACTCCG 395
|||||.|||||||||||||||||.||||||||.||..|.|||||.|||||
RBAM_027160__ 346 TCTCCCTCAGGTGAAACAGAAACGCCCCAAGCATTTCGTGATGCGCTCCG 395
BSNT_04379 396 CTATACGTTTTTCCACTGGGGTTTGCACGCTTGGGCCATTTATGCCATTG 445
.||.||.||||||||||||||..||||||||||||||||.|||||..|.|
RBAM_027160__ 396 GTACACATTTTTCCACTGGGGGCTGCACGCTTGGGCCATCTATGCGGTCG 445
BSNT_04379 446 TGGCATTATGCATTGCCTATTTCCAATTCCGCAAAGGCGCACCCGGGTTA 495
|.||.|||||.||.||.|||||.||||||.|.||||.|||.|||||.||.
RBAM_027160__ 446 TCGCTTTATGTATCGCATATTTTCAATTCAGAAAAGACGCGCCCGGTTTG 495
BSNT_04379 496 ATCAGCAGCACACTGTCACCGATTCTCGGGGATAAAGTAAACGGACCGAT 545
|||||||||||||||.|||||.||.|.||.||||||||||||||.|||||
RBAM_027160__ 496 ATCAGCAGCACACTGACACCGCTTTTGGGCGATAAAGTAAACGGGCCGAT 545
BSNT_04379 546 CGGAAAGGCCATTGACTGTATTGCAGTTTTCGCCACTGTTGTCGGGGTGT 595
|||.||.||.|||||||||||.||.||.||.||.||.||||||||.|||.
RBAM_027160__ 546 CGGCAAAGCGATTGACTGTATCGCCGTGTTTGCGACCGTTGTCGGTGTGG 595
BSNT_04379 596 CAACAAGTCTT-GGTCTTGGCGCAACCCAAANGCAACCCAAATTAACGGC 644
|.||||| ||| ||.||.|| ||.||.||.||.||||||
RBAM_027160__ 596 CGACAAG-CTTAGGGCTCGG-----------AGCGACTCAGATCAACGGC 633
BSNT_04379 645 GGTTTGA------------------------------------------- 651
|||.||.
RBAM_027160__ 634 GGTCTGCATTATTTATTCGGCATTCCGAAAACATTTTCCATTCAGCTGAT 683
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 684 CCTGATCGCTGTCGTGACCGTGTTATTTTTGATTTCTGCGTGGAGCGGAA 733
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 734 TCGGCAAAGGGATTAAATACTTAAGCAATACCAACATGGCGCTCGCGGCT 783
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 784 ATTTTAATGATCTTTATGCTCATTGCAGGCCCGACGGTGCTGATTATGAA 833
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 834 CTCATTTACCGATTCTATCGGCCAATACATACAAAATATCGTGCAGATGA 883
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 884 GCTTTCGCTTGTCTCCGAATGATCCCCAAAAGCGCGAATGGATTAACAGC 933
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 934 TGGACCATTTTCTATTGGGCCTGGTGGATATCCTGGTCGCCGTTTGTCGG 983
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 984 CATTTTTATCGCCCGTGTATCAAGGGGCCGGACGATCCGGGAATTTTTAA 1033
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 1034 TCGGGGTATTGGTGACACCTTGTATATTGGCTTTCTTATGGTTTGCGATC 1083
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 1084 TTCGGTGTATCCGCGATGGATCTTCAGCAGAAAGGCGTATTCAATGTCGC 1133
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 1134 GGGAATGTCAACGGATACGATGCTGTTCGGCGCACTCAGCCACTATCCGC 1183
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 1184 TGACAATGGTGACATCCGTATTAACGCTTGTTCTGATCGCTGTATTCTTT 1233
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 1234 ATTACATCAGCGGATTCAGCGACATTTGTGCTTGGAATGCAAACGTCTTA 1283
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 1284 CGGCTCTTTAGACCCGTCAAACCGGGTGAAAATCATCTGGGGCGTCATCC 1333
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 1334 AGTCCGCCGTGGCAGCGGTTTTGTTATATTCCGGCGGTCTGGCCGCACTG 1383
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 1384 CAAAACACGGCCATTCTCGCCGCGGTTCCGTTTTCAGTCGTGATCCTTCT 1433
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 1434 GATGATCGTGTCTCTGTACAAGTCATTAGCGAGCGAGAGAAAAGGAATCA 1483
BSNT_04379 651 -------------------------------------------------- 651
RBAM_027160__ 1484 AACAAGCGGAGAAATACCAAAAACCAAGAAGTCCCCGCGTCAAAAAAGCA 1533
BSNT_04379 651 --- 651
RBAM_027160__ 1534 TAA 1536
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