Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04377 and RBAM_027140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:51
# Commandline: needle
# -asequence dna-align/BSNT_04377___ytgP.1.9828.seq
# -bsequence dna-align/RBAM_027140___ytgP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04377___ytgP-RBAM_027140___ytgP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04377___ytgP-RBAM_027140___ytgP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04377___ytgP
# 2: RBAM_027140___ytgP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1659
# Identity: 1287/1659 (77.6%)
# Similarity: 1287/1659 (77.6%)
# Gaps: 45/1659 ( 2.7%)
# Score: 4867.0
#
#
#=======================================
BSNT_04377___ 1 ATGTCAAGCAAACTGTTAAGAGGCACGTTTGTATTAACGCTCGGTACATA 50
||||||||||||.|||||||.||||||||.||..|.||||||||.||.||
RBAM_027140__ 1 ATGTCAAGCAAATTGTTAAGGGGCACGTTCGTGCTGACGCTCGGCACCTA 50
BSNT_04377___ 51 TATATCGCGGATTCTGGGGATGGTCTATTTAATTCCCTTC--AGCATTAT 98
|||||||||||||.|.||||||.|.|||.|.||.||.||| ||| .||
RBAM_027140__ 51 TATATCGCGGATTTTAGGGATGATTTATCTGATCCCGTTCGGAGC--GAT 98
BSNT_04377___ 99 GGTCGGGGCGACAGGCGGTGCATTATTTCAATACGGATACAACCAATACA 148
||||||.|||||.|||||.||.||.||||||||||||||.||.|||||.|
RBAM_027140__ 99 GGTCGGAGCGACGGGCGGAGCTTTGTTTCAATACGGATATAATCAATATA 148
BSNT_04377___ 149 CTTTATTTTTGAATATTGCTACGATGGGCTTTCCGGCCGCTGTTTCTAAA 198
|..|.|||||.||.|||||.||||||||.|||||.|||||.|||||.|||
RBAM_027140__ 149 CACTGTTTTTAAACATTGCCACGATGGGATTTCCCGCCGCGGTTTCAAAA 198
BSNT_04377___ 199 TTTGTTTCCAAATATAATTCAAAAGGGGATTATGAGACAAGCAGGAAAAT 248
|||||.||.||||||||.||.|||||.||.||||||||.||||||...||
RBAM_027140__ 199 TTTGTCTCGAAATATAACTCCAAAGGAGACTATGAGACGAGCAGGCGGAT 248
BSNT_04377___ 249 GCTCAAGGCGGGCATGTCGGTTATGCTCGTCACAGGAATGATAGCCTTTT 298
|||.|..|||||.|||||||||||||||||.||.||.|||||.| |||||
RBAM_027140__ 249 GCTGAGAGCGGGAATGTCGGTTATGCTCGTAACCGGGATGATCG-CTTTT 297
BSNT_04377___ 299 TC-ATTCTGTATCTATCGGCTCCGATGTTTGCGGAAATATCGCTGGGAGG 347
|| |||||.|||.|.|||||.|||.|.||||||||||.|||.||.||.||
RBAM_027140__ 298 TCAATTCTTTATATTTCGGCGCCGTTTTTTGCGGAAACATCTCTCGGCGG 347
BSNT_04377___ 348 CAAGGATAATAACGG-CTTGACAATTGATCATGTCGTTTATGTCATCCGC 396
||.|..|||.||||| ||| ||.|||||.||.|||||||||||||||||.
RBAM_027140__ 348 CACGAGTAACAACGGACTT-ACGATTGACCACGTCGTTTATGTCATCCGG 396
BSNT_04377___ 397 ATGGTCAGCTTAGCGCTTTTGGTCGTACCGATTATGAGCCTTGTCCGCGG 446
||||||||..|.||.|||||||||||.|||||||||||.|||||.|||||
RBAM_027140__ 397 ATGGTCAGTCTGGCACTTTTGGTCGTGCCGATTATGAGTCTTGTGCGCGG 446
BSNT_04377___ 447 ATTCTTTCAAGGGCACCAAATGATGGGTCCGACAGCTGTTTCCCAAGTCG 496
.||.||.|||||.||.||.||||||||.||||||||.|||||.||.||.|
RBAM_027140__ 447 TTTTTTCCAAGGTCATCAGATGATGGGGCCGACAGCCGTTTCACAGGTTG 496
BSNT_04377___ 497 TTGAACAGATTGTCCGCATCATCTTTCTATTGAGTGCGACATTCTTGATT 546
|.||.|||.|||.|||.|||||||||.|||||.|.||.||.|..||||||
RBAM_027140__ 497 TGGAGCAGCTTGCCCGGATCATCTTTTTATTGGGCGCAACGTATTTGATT 546
BSNT_04377___ 547 TTGAAG-GTTTTCAACGGCGGCCTTGTCATCGCTGTGGGCTATGCAACCT 595
|| ||| ||..||||||||||||||||||||||.||.||.||.||.||.|
RBAM_027140__ 547 TT-AAGAGTGATCAACGGCGGCCTTGTCATCGCAGTCGGATACGCGACTT 595
BSNT_04377___ 596 TCGCAGCGCTGATCGGTGCCTTCGGGGGGCTGGTCGTGCTTTATATTTAT 645
||||.|||||||||||..|.|||||.|||||.|||||.|||||||||||.
RBAM_027140__ 596 TCGCGGCGCTGATCGGATCATTCGGAGGGCTTGTCGTCCTTTATATTTAC 645
BSNT_04377___ 646 TGGAACAAACGGAAGGGCAGCCTGCTGGCGATGATGCCGAATACGGGT-C 694
|||||.||.|||||||||...||.||||||||||.||||||| |..|| |
RBAM_027140__ 646 TGGAATAAGCGGAAGGGCGATCTTCTGGCGATGAAGCCGAAT-CTCGTCC 694
BSNT_04377___ 695 CGACAGCAAACCTAAGCTACAAAAAAATGTTTTTCGAGCTGTTCAGCTAT 744
||.|.||.|||.||||.||.|||||||||||..|.|||||.|||||.|||
RBAM_027140__ 695 CGTCTGCGAACTTAAGTTATAAAAAAATGTTCATTGAGCTTTTCAGTTAT 744
BSNT_04377___ 745 GCTGCTCCGTACGTTTTTGTCGGACTAGCCATCCCTTTGTATAACTATAT 794
||.|||||.|||||.|||||||||||.||.||.|||||||||...|||||
RBAM_027140__ 745 GCCGCTCCTTACGTATTTGTCGGACTGGCGATTCCTTTGTATTCGTATAT 794
BSNT_04377___ 795 TGATACAAATACGTTTAACAAAGCGATGATTGAAGCCGGTCATCAA-GCC 843
.|||||.|||||||||||.|||||||||||||..||.||.|| ||| |..
RBAM_027140__ 795 CGATACGAATACGTTTAATAAAGCGATGATTGCGGCGGGCCA-CAAGGAT 843
BSNT_04377___ 844 ATCAGCCAGGACATGCTTGCGATTCTAACCCTGTATGTTCAGAAGCTCGT 893
||||||||||||||||||||||||.|.|||||.|||||.|.||||||.||
RBAM_027140__ 844 ATCAGCCAGGACATGCTTGCGATTGTCACCCTTTATGTGCCGAAGCTTGT 893
BSNT_04377___ 894 GATGATCCCGGTTTCCCTAGCAACTGCTTTCGGACTGACATTAATTCCAA 943
.||||||||||||||.||.||.||.||||||||.|||||..|.|||||.|
RBAM_027140__ 894 CATGATCCCGGTTTCTCTGGCGACCGCTTTCGGTCTGACGCTGATTCCGA 943
BSNT_04377___ 944 CGATTACTGAATCGTTTACAAGCGGAAACTATAAGCTGTTAAATCAGCAG 993
|||||||||||||||||||.|||.|.||.||||||||.||.||.||||||
RBAM_027140__ 944 CGATTACTGAATCGTTTACGAGCAGGAATTATAAGCTTTTGAACCAGCAG 993
BSNT_04377___ 994 ATTAATCAAACGATGCAGACGATCCTGTTTTTAATTATTCCGGCTGTTGT 1043
|||||.||.||||||||.|..||.||||||||..|||||||.||.|||||
RBAM_027140__ 994 ATTAACCAGACGATGCAAATCATTCTGTTTTTGGTTATTCCCGCCGTTGT 1043
BSNT_04377___ 1044 CGGGATCTCTCTATTGTCAGGACCGACGTATACGTTCTTTTACGGGTCAG 1093
||||||.||..|.||.||.||.|||.|.|||||||||||.|||||.||.|
RBAM_027140__ 1044 CGGGATGTCCGTGTTATCGGGTCCGGCCTATACGTTCTTCTACGGCTCTG 1093
BSNT_04377___ 1094 AGAGCCTTCACCCTGAACTGGG---GGCAAACATTTTGCTATGGTATTCG 1140
|.||.||||.|||.||..|.|| || |.||.|||.|.|||||..||
RBAM_027140__ 1094 AAAGTCTTCGCCCGGATATCGGACAGG---ATATATTGTTCTGGTACGCG 1140
BSNT_04377___ 1141 CCAGTCGCGATTTTGTTCTCTTTGTTTACAGTCAACGCAGCCATTCTGCA 1190
||.||||||||..||||.|||.|||||||.||.|||||.||.||.|||||
RBAM_027140__ 1141 CCTGTCGCGATACTGTTTTCTCTGTTTACCGTAAACGCCGCGATCCTGCA 1190
BSNT_04377___ 1191 GGGCATCAATAAGCAAAAATTTGCGGTTGTCAGCCTTGTGATCGGTGTCG 1240
.||.||.||||||||.||||||||.||.||.||||||.|.|||||.|||.
RBAM_027140__ 1191 AGGGATTAATAAGCAGAAATTTGCTGTCGTGAGCCTTTTCATCGGCGTCA 1240
BSNT_04377___ 1241 TGATCAAGCTTGTGCTGAATGTTCCGCTGATCAAGCTGATGCAGGCTGAC 1290
|.||.||..|.||||||||..|.|||||||||||||||.|.||||..|||
RBAM_027140__ 1241 TTATAAAAGTGGTGCTGAACATGCCGCTGATCAAGCTGTTTCAGGGAGAC 1290
BSNT_04377___ 1291 GGAGCGATTTTAGCGACGGCGCTTGGATATATCGCTTCCCTTTTATATGG 1340
||.||.||.||.||.||||||||.||.|||||||||||.|||.|.||.||
RBAM_027140__ 1291 GGGGCCATCTTGGCAACGGCGCTCGGTTATATCGCTTCTCTTCTGTACGG 1340
BSNT_04377___ 1341 GTTTATCATGATTAAGCGCCATGCAGGCTATTCGTATAAGATACTAGTTA 1390
.|||||.|||||||||||||||||.|||||||||||||.|.||||..|.|
RBAM_027140__ 1341 TTTTATTATGATTAAGCGCCATGCGGGCTATTCGTATACGGTACTTATAA 1390
BSNT_04377___ 1391 AACGAACTG----TTTTGAT-GCTTGTATTATCAGCCATTATGGGTATTG 1435
|||| | ||||.|| || .||..|.||.|.|.|.|||||..|.|
RBAM_027140__ 1391 AACG----GGTCATTTTAATCGC-AGTCCTGTCCGTCCTGATGGGAGTCG 1435
BSNT_04377___ 1436 CCGTGAA----AATCGTGCAGTGGGTATTAGGCTTCTTTATTTCCTATCA 1481
|.||.|| |.| ||.|||.|..|..||||||||.|..|.||.||
RBAM_027140__ 1436 CGGTCAAGCTGACT----CAATGGCTGCTCAGCTTCTTTGTAACATACCA 1481
BSNT_04377___ 1482 GGATGGCCAGCTGCAAGCTGCGATTGTTGTGGTGATC-GCGGCCGCTGTT 1530
....||||||.||||.||.||||||||.||..|..|| || ||||||||.
RBAM_027140__ 1482 AAGCGGCCAGGTGCATGCGGCGATTGTCGTCTTTGTCTGC-GCCGCTGTC 1530
BSNT_04377___ 1531 GGCGGAGCTGTCTACCTGTATTGCGGC-TACCGATTAGGATTTTTACAGA 1579
|||||.||.||.|||.||| ||||.|| ||||||.|.|||||||||||||
RBAM_027140__ 1531 GGCGGTGCGGTGTACATGT-TTGCCGCGTACCGAATCGGATTTTTACAGA 1579
BSNT_04377___ 1580 AAATTTTAGGCCGCCGTTTGCCAGGTTTCTTAAGGAAAGGCAGACATGCA 1629
||||.||.||...||||.||||..|..|.|||||||.||||||.|||.|.
RBAM_027140__ 1580 AAATGTTTGGAAACCGTCTGCCCCGCGTTTTAAGGAGAGGCAGGCATTCC 1629
BSNT_04377___ 1630 GGC---TGA 1635
|.| |||
RBAM_027140__ 1630 GCCCATTGA 1638
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