Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04372 and RBAM_027110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:50
# Commandline: needle
# -asequence dna-align/BSNT_04372___ythP.1.9828.seq
# -bsequence dna-align/RBAM_027110___ythP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04372___ythP-RBAM_027110___ythP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04372___ythP-RBAM_027110___ythP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04372___ythP
# 2: RBAM_027110___ythP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 754
# Identity: 511/754 (67.8%)
# Similarity: 511/754 (67.8%)
# Gaps: 92/754 (12.2%)
# Score: 1629.5
#
#
#=======================================
BSNT_04372___ 1 TTGACA-AATTTGCTTGAAGCTTCAATAGAACA-------GGCCGGGTAT 42
|||..| |||| .||||| |.|| |||| .|||||.|||
RBAM_027110__ 1 TTGGGAGAATT--ATTGAA--TGCA----AACATTGTCTGCGCCGGTTAT 42
BSNT_04372___ 43 ----ACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGAAGTCA--- 85
|||.|||| ||.|||.|..|.|||||.|.||||..|||||
RBAM_027110__ 43 GCTGACAGGCCG----AAGGTGATTTCTGATGTATCTCTGTCAGTCAACG 88
BSNT_04372___ 86 -----GAAAAGGGGAACTAGTT---GGACTGATCGGAGCTAACGGCGCCG 127
|||| || ||..|.||||||||.||||||||.|
RBAM_027110__ 89 CTGGTGAAA-----------TTACCGGTTTAATCGGAGCGAACGGCGCGG 127
BSNT_04372___ 128 GAAAAAGCACCGCAATCAAGGCGATACTCGGCCTTTCAGAAGATTTTAAA 177
|.||||||||.|..||.||||||.|.|||||.||.||....|| |.||.|
RBAM_027110__ 128 GGAAAAGCACAGTGATAAAGGCGGTTCTCGGGCTGTCCCGGGA-TATAGA 176
BSNT_04372___ 178 GGGC--ATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCAT 225
|||| | ||||..|||||.||.|..||.|.|||.||.||.|||||||.|
RBAM_027110__ 177 GGGCGGA-ATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGT 225
BSNT_04372___ 226 CCGTCCTTTTACGAAGAACTGACGCTGTGGGAGCATTTGGATCTGATCAG 275
|||...|||||.||.|||||||||||.|||||||||.|.||.||||.|.|
RBAM_027110__ 226 CCGAGTTTTTATGATGAACTGACGCTTTGGGAGCATCTCGAGCTGACCGG 275
BSNT_04372___ 276 CACACTCCACGGCATTGAAGGGAG-AGAATTTGTGC----ATCGGGCCCA 320
..||.|.|..||.||.||| |||| |||| ||| |.|||||
RBAM_027110__ 276 GTCATTGCGGGGTATAGAA-GGAGAAGAA----TGCCGTGAGCGGGC--- 317
BSNT_04372___ 321 AAGCCTGCTGC----AGACGTTTTCGCTTGA--TCATGTCAAACATGAGC 364
|.|.|.||||| ||| |||||||| ||| || |||.||||||||..
RBAM_027110__ 318 AGGGCGGCTGCTTGAAGA-GTTTTCGC-TGACGTC-TGTAAAACATGATT 364
BSNT_04372___ 365 TGCCT----GTCACCTTTTCGAAGGGCATGCAGCAAAAACTAATGCTTAT 410
||||| || |||||.||.||.||||||||||||.|.|||||.||
RBAM_027110__ 365 TGCCTTCCGGT----TTTTCAAAAGGGATGCAGCAAAAATTGATGCTCAT 410
BSNT_04372___ 411 CCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTA 460
.|||||.|||.|..|.|||||||||||.||..|.||||||||.||.||||
RBAM_027110__ 411 ACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTA 460
BSNT_04372___ 461 TCGGCCTTGATCCGATATCGACGAAACGCTTTGTGGACATGCTTAAGGCT 510
||||.|||||||||||.||.|||||.|..|||...||||||||.|..|||
RBAM_027110__ 461 TCGGACTTGATCCGATCTCAACGAAGCTGTTTACCGACATGCTGATTGCT 510
BSNT_04372___ 511 GAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC 560
||.||||||.|.||.||.||.|||.|.||||||||.|||||.||.|||||
RBAM_027110__ 511 GAGAAAGAAAGGGGCGCGGGGATTTTGATGTGCACTCATGTTCTGGATAC 560
BSNT_04372___ 561 CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTAT 610
.||||||||||||||.||||||||||||.||.|.||..|.||..|..|..
RBAM_027110__ 561 GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGC 610
BSNT_04372___ 611 TTCTCCAAGGCACGTTAAAAGATATTCAGGACAAGACCGGATTAGAGGGG 660
||||.||||||||||||.|.||..|||||||.||.|| |.||.|
RBAM_027110__ 611 TTCTTCAAGGCACGTTAGAGGAGCTTCAGGAAAAAAC-------GGGGAG 653
BSNT_04372___ 661 CAG-TCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTG--ATCGGCT 707
|.| |||.||||.||.||.||||||...||.|||| ||.| .||.||.
RBAM_027110__ 654 CCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTC--GGAGCAGTCAGCG 701
BSNT_04372___ 708 ATGA 711
||||
RBAM_027110__ 702 ATGA 705
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