Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04368 and RBAM_027070

See Amino acid alignment / Visit BSNT_04368 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:50
# Commandline: needle
#    -asequence dna-align/BSNT_04368___ytkP.1.9828.seq
#    -bsequence dna-align/RBAM_027070___ytkP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04368___ytkP-RBAM_027070___ytkP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04368___ytkP-RBAM_027070___ytkP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04368___ytkP
# 2: RBAM_027070___ytkP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 949
# Identity:     728/949 (76.7%)
# Similarity:   728/949 (76.7%)
# Gaps:          29/949 ( 3.1%)
# Score: 2736.0
# 
#
#=======================================

BSNT_04368___      1 ATGTTGAAAATCGTTGCAAA---CACAGCTGATCTGATAGGAGATACACC     47
                        |||||||||||   |||   |||.||.||.|||||.||.|..|||||
RBAM_027070__      1 ---TTGAAAATCGT---AAACAGCACGGCGGAGCTGATCGGCGGCACACC     44

BSNT_04368___     48 GCTAGTGAGATTGAATCGGCTTCAGCCGGAAAATGCGGCACAAGTCTATT     97
                     |.|.||.|...|.|||||.||||||||.|||.||||.|||||.|||||||
RBAM_027070__     45 GATCGTAAAGCTCAATCGTCTTCAGCCAGAACATGCAGCACAGGTCTATT     94

BSNT_04368___     98 TGAAGCTTGAATTTTTCAATCCGAGCGGCAGTGTGAAAGACAGAGCCGCT    147
                     |.||..|.||||..||.||.||||||||||||||.|||||||||||.|||
RBAM_027070__     95 TAAAATTAGAATCGTTTAACCCGAGCGGCAGTGTCAAAGACAGAGCGGCT    144

BSNT_04368___    148 TATCAA-ATGATCATAGAAGCTGAACAAAACGG---TTTACTCAAGCCGG    193
                     || ||| ||||||||.|||||.|||.|.|.|||   ||||   ||.||.|
RBAM_027070__    145 TA-CAATATGATCATTGAAGCGGAAAACAGCGGGCATTTA---AAACCCG    190

BSNT_04368___    194 GATCAGTTATTATAGAGCCGACAAGCGGAAATACCGGAATCGGGCTCGCC    243
                     |.||.||.||.||.||.|||||||||||.||.||.||.|||||.||.||.
RBAM_027070__    191 GCTCTGTCATCATCGAACCGACAAGCGGCAACACAGGCATCGGCCTGGCG    240

BSNT_04368___    244 ATGAATGCGGCAGCACGCGGATATAAAGCAATCTTAGTTATGCCTGATAC    293
                     |||||.|||||.||.|||||.||.||.||||||.|.||.||||||||.||
RBAM_027070__    241 ATGAACGCGGCGGCGCGCGGCTACAAGGCAATCCTCGTCATGCCTGACAC    290

BSNT_04368___    294 GATGACGAAGGAACGGATCAACCTGCTTAAAGCTTACGGTGCAGAGGTTG    343
                     |||||||||.|||||.||||||||.||.|||||.|||||.||.|||||||
RBAM_027070__    291 GATGACGAAAGAACGCATCAACCTCCTGAAAGCGTACGGCGCGGAGGTTG    340

BSNT_04368___    344 TATTAACTCCCGGAGAGGAAAGAATGCCGGGCAGCATCAAAAAAGCGAAG    393
                     |.|||||.||.||.|.||||||||||||.||.|||||||||||||||||.
RBAM_027070__    341 TGTTAACACCGGGGGCGGAAAGAATGCCCGGAAGCATCAAAAAAGCGAAA    390

BSNT_04368___    394 GAGCTTGCCGAACAAATTCCGAACAGCTATATTCCAATGCAGTTCGATAA    443
                     ||.||.||||||||.||||||...||.|.|||.||.|||||.||||||||
RBAM_027070__    391 GAACTCGCCGAACAGATTCCGGGAAGTTTTATCCCGATGCAATTCGATAA    440

BSNT_04368___    444 CACTGCTAATCCTGATGCGCACCGGAAAACAACAGCGCC--TGAAATCGC    491
                     |...||.|||||.|||||.|||||.|||||.||  ||||  |||||||..
RBAM_027070__    441 CGGCGCAAATCCAGATGCCCACCGAAAAACGAC--CGCCATTGAAATCTA    488

BSNT_04368___    492 CCGGGCAATAGAGGAAATCGGAAAACCGCTCGGCGCTTTTGTCGCCTCCT    541
                     .|.|||..|..||.|..||...|.|||||||||.||||||||.||..|..
RBAM_027070__    489 TCAGGCCGTTCAGCAGCTCAACAGACCGCTCGGTGCTTTTGTGGCAACGG    538

BSNT_04368___    542 CTGGAACGGGCGGAACCATTACCGGAACAGGTGAGGCGCTCAAAGAGCTT    591
                     |.||||||||||||||||||||||||||.||.||..||||.||.||||||
RBAM_027070__    539 CGGGAACGGGCGGAACCATTACCGGAACCGGAGAAACGCTGAAGGAGCTT    588

BSNT_04368___    592 TTTCCGGATATCACGGTTCATGTTGTTGAGCCAGCGGGTTCGCCTGTATT    641
                     ||.||||||||.|..||||||||.|..|||||.|||||.||.||.||..|
RBAM_027070__    589 TTCCCGGATATGATTGTTCATGTCGCCGAGCCCGCGGGATCTCCCGTCCT    638

BSNT_04368___    642 ATCCGGCGGAAAACCTGGCGCGCATAAACTTGTAGGAACGAGCCCAGGCT    691
                     .||.|||||||||||.|||||.|||||.|||||.||.||.|||||.||.|
RBAM_027070__    639 GTCTGGCGGAAAACCCGGCGCTCATAAGCTTGTCGGGACAAGCCCCGGAT    688

BSNT_04368___    692 TTATACCGCCG--ATTTTAAATGAAGACGTTTATGATGAAATTATCAAAA    739
                     ||||.|  |||  ||..|.|||.|.||||||||.||||||||.||.||||
RBAM_027070__    689 TTATTC--CCGGCATACTGAATCAGGACGTTTACGATGAAATCATGAAAA    736

BSNT_04368___    740 TCTCTGATGAAGACGCGTATACGACGACAAGACGGCTTGCTGCTGAAGAA    789
                     |.|||||||||||.|||||||||||.|||.|.||.||.||....||||||
RBAM_027070__    737 TATCTGATGAAGATGCGTATACGACAACACGTCGTCTGGCCCGGGAAGAA    786

BSNT_04368___    790 GGAATTCTTGTCGGTCCTTCATCAGGCGCTGCCTGCTTCGCGGCAATCGA    839
                     ||.||.||.|||||.||.||.||||||||.|||||||||||.||.||.||
RBAM_027070__    787 GGTATACTCGTCGGCCCGTCTTCAGGCGCCGCCTGCTTCGCCGCCATTGA    836

BSNT_04368___    840 AACAGCGAAACGCCTCTCTCCTGACAAAG-TTGTGGTCTGCATGACAGCT    888
                     |||.||.|||||||||.||.|.|| |.|| |.||..||||.|||||.||.
RBAM_027070__    837 AACCGCAAAACGCCTCCCTTCCGA-ACAGATCGTCATCTGTATGACGGCC    885

BSNT_04368___    889 GATACAGGAGAACGGTACTTATCAACTGATTTATGGTCATTT-ATTTAA    936
                     |||||.||||||||.||.||||||||.||||||||||||||| |.|.| 
RBAM_027070__    886 GATACGGGAGAACGTTATTTATCAACGGATTTATGGTCATTTGAATGA-    933


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04368 and RBAM_027070

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
