Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04367 and RBAM_027060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:50
# Commandline: needle
# -asequence dna-align/BSNT_04367___ytlP.1.9828.seq
# -bsequence dna-align/RBAM_027060___ytlP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04367___ytlP-RBAM_027060___ytlP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04367___ytlP-RBAM_027060___ytlP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04367___ytlP
# 2: RBAM_027060___ytlP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 588
# Identity: 388/588 (66.0%)
# Similarity: 388/588 (66.0%)
# Gaps: 72/588 (12.2%)
# Score: 1202.0
#
#
#=======================================
BSNT_04367___ 1 ATGCCAGATATACGGCCTCATTATTTCATCGGCGTTCCCATACCTGAGGG 50
|||..||.|..|..|||.||||||||.||||||.||||.||.||.|..|.
RBAM_027060__ 1 ATGAAAGCTTCATTGCCGCATTATTTTATCGGCATTCCGATTCCGGCTGA 50
BSNT_04367___ 51 AATTGCAAATCCGATCTACCAGGCTGCGAAAAACGAACCGATATTGACGT 100
.|||||..|.|||||.|...|.||.||.|||||.||.|||...||..|.|
RBAM_027060__ 51 CATTGCTGAACCGATTTGGGAAGCAGCCAAAAAGGAGCCGGCGTTATCAT 100
BSNT_04367___ 101 TTCAAAAATGGGTGCACCCGCTTGACTATCATATCACGTTAATTTTTCTC 150
|..||||||||||||||||||.||||||||||||.||..|.|||||||||
RBAM_027060__ 101 TCAAAAAATGGGTGCACCCGCATGACTATCATATTACACTCATTTTTCTC 150
BSNT_04367___ 151 GGAGCGGCGGATGAGACACAAATAAAGAA--GCTTG---AAGGTTC---- 191
|||||.||||||| ||||| ||||| ||...||
RBAM_027060__ 151 GGAGCCGCGGATG-----------AAGAACGGCTTGCGAAATTATCGTCT 189
BSNT_04367___ 192 --GCTAGCAGAGATTGCTTCAGAAATTGACCCATTTTCAATTGAGTTTGA 239
|||.|||||...|||.||.|.|....|.||.|||.|..|..|||||.|
RBAM_027060__ 190 CTGCTCGCAGATGCTGCGTCGGCAGCGCAGCCGTTTACCGTACAGTTTCA 239
BSNT_04367___ 240 CAAGATAGATGTATTCGGCGACCGCAGAAGGCCGCGCGTTTTACATCTGG 289
..|..|.|||.|.|||||||||||||||..||||.|.||..|.||.||.|
RBAM_027060__ 240 GCATCTGGATATTTTCGGCGACCGCAGACAGCCGAGAGTGCTTCACCTTG 289
BSNT_04367___ 290 AGCC--AAAGAAA--AACAAAACGC---TTGATAGACTGCGGGAACATAC 332
|||| ||.|.|| ||| .|| ||||| .||||||||.|.||
RBAM_027060__ 290 AGCCCGAACGGAATGAAC----TGCTCTTTGAT---TTGCGGGAAAAAAC 332
BSNT_04367___ 333 GAAGCAGGCTGTCCTTCAGGCCGGCTTTCAAGTGGAAAAAAGACCGTATC 382
.||.||||||||..|..|||||||.|||||||||||||||.|.|||||||
RBAM_027060__ 333 AAAACAGGCTGTTTTGAAGGCCGGTTTTCAAGTGGAAAAACGCCCGTATC 382
BSNT_04367___ 383 ATCCTCATATGACGCTGGCAAGAAAATGGACAGGCGAAAATGGA------ 426
|.||||||||||||.||||..|.||.|| |||| |||
RBAM_027060__ 383 ACCCTCATATGACGATGGCGCGGAAGTG----GGCG-----GGAGACCGG 423
BSNT_04367___ 427 ---TTTCCAGCTCATGTTCCGTTTGAAAGCG-------GCGAAGTTTCGA 466
|||||.|...||||.||||||||||||| ||.||||..||
RBAM_027060__ 424 CCGTTTCCTGACGATGTGCCGTTTGAAAGCGGCAGGGTGCAAAGTGCCG- 472
BSNT_04367___ 467 TGATGGCTGAACGATTTTCGCTCTTTCAAATACA-CTTGAACCAATCACC 515
|.| || ||.|||||..|.|||||.|..|| |||| |||..||.||
RBAM_027060__ 473 TCA--GC----CGGTTTTCCTTGTTTCAGACCCATCTTG-ACCGGTCGCC 515
BSNT_04367___ 516 AAAATACGAGGAAATATTCA-AATTTCAATTATCTTAA 552
|||||||||.||||| ..|| |.||||||||..|.|||
RBAM_027060__ 516 AAAATACGAAGAAAT-CGCACAGTTTCAATTGACATAA 552
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