Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04362 and RBAM_027030

See Amino acid alignment / Visit BSNT_04362 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:49
# Commandline: needle
#    -asequence dna-align/BSNT_04362___ytmP.1.9828.seq
#    -bsequence dna-align/RBAM_027030___ytmP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04362___ytmP-RBAM_027030___ytmP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04362___ytmP-RBAM_027030___ytmP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04362___ytmP
# 2: RBAM_027030___ytmP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity:     683/814 (83.9%)
# Similarity:   683/814 (83.9%)
# Gaps:          20/814 ( 2.5%)
# Score: 2948.0
# 
#
#=======================================

BSNT_04362___      1 ------------ATGAACTGGTTGGGACAATTACTAGGTAGCGATTGGGA     38
                                 ||||||||||||||||||||||||||||||||||||||
RBAM_027030__      1 TTGAACATTGATATGAACTGGTTGGGACAATTACTAGGTAGCGATTGGGA     50

BSNT_04362___     39 GATCTTCCCCGCCGGAGGAGCTACAGGAGATGCATATTATGCGAAACATA     88
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_027030__     51 GATCTTCCCCGCCGGAGGAGCTACAGGAGATGCATATTATGCGAAACATA    100

BSNT_04362___     89 ACGGGCAGCAGCTTTTTTTAAAACGTAATAGCTCACCTTTTTTAGCTGTT    138
                     ||||.||.||||||||||||||||||||||||||.||.||||||||.||.
RBAM_027030__    101 ACGGCCAACAGCTTTTTTTAAAACGTAATAGCTCGCCCTTTTTAGCCGTG    150

BSNT_04362___    139 TTATCCGCCGAAGGCATTGTTCCGAAGCTGGTTTGGACAAAACGGATGGA    188
                     ||||||||||||||||||||||||||||||||||||||.|||||||||||
RBAM_027030__    151 TTATCCGCCGAAGGCATTGTTCCGAAGCTGGTTTGGACGAAACGGATGGA    200

BSNT_04362___    189 AAATGGGGACGTCATTACGGCCCAGCACTGGATGACCGGCAGAGAGCTGA    238
                     |||.|||||||||||||||||.|||||.||||||.|.|||||.|||||||
RBAM_027030__    201 AAACGGGGACGTCATTACGGCTCAGCATTGGATGGCGGGCAGGGAGCTGA    250

BSNT_04362___    239 AGCCTAAAGACATGAGCGGACGGCCCGTTGCTGAATTGCTTCGTAAAATA    288
                     ||.|.||.||.|||||||||||.||.||.|||||..||||.||.|||||.
RBAM_027030__    251 AGGCAAAGGATATGAGCGGACGCCCGGTGGCTGAGCTGCTCCGCAAAATC    300

BSNT_04362___    289 CACACATCGAAAGCCTTGCTGGACATGCTGAAGAGACTTGGAAAAGAACC    338
                     ||||||||.|||||.|||||.|||||||||||.|||.|.|||||||||||
RBAM_027030__    301 CACACATCAAAAGCTTTGCTCGACATGCTGAAAAGATTGGGAAAAGAACC    350

BSNT_04362___    339 GCTGAACCCGGGGGCTCTTTTGTCTCAGCTGAAGCAGGCTGTATTTGCTG    388
                     |||..|.|||||.||.||||||||.||||||||||||||.||.|||||.|
RBAM_027030__    351 GCTTGATCCGGGCGCCCTTTTGTCGCAGCTGAAGCAGGCCGTCTTTGCCG    400

BSNT_04362___    389 TGCAGCAATCTTCGCCGCTGATTCAAGAAGG----GATCAAGTATTTGGA    434
                     |||.|||||.|||||||||.|||||.|||||    |.|    ||||||||
RBAM_027030__    401 TGCGGCAATTTTCGCCGCTTATTCAGGAAGGCCTTGCT----TATTTGGA    446

BSNT_04362___    435 AGAACACCTGCATGAAGTGCATTTCGGTGAGAAAGTCGTTTGCCATTGTG    484
                     ||..||..||.||.|.|||||.||||||||.|||||||||||||||||||
RBAM_027030__    447 AGCTCATGTGGATCAGGTGCAATTCGGTGAAAAAGTCGTTTGCCATTGTG    496

BSNT_04362___    485 ATGTCAATCATAATAACTGGCTATTGTCTGAAGACAACCAGCTGTATTTA    534
                     ||||.|||||||||||||||||..||||||||||||||||||||||||||
RBAM_027030__    497 ATGTGAATCATAATAACTGGCTTCTGTCTGAAGACAACCAGCTGTATTTA    546

BSNT_04362___    535 ATTGACTGGGACGGCGCCATGATCGCTGATCCGGCGATGGACCTCGGGCC    584
                     ||.||.|||||||||||||||||.|||||||||||.|||||.|||||.||
RBAM_027030__    547 ATAGATTGGGACGGCGCCATGATAGCTGATCCGGCCATGGATCTCGGCCC    596

BSNT_04362___    585 TTTGCTGTACCACTACGTCGAAAAGCCAGCTTGGGAGAGCTGGCTGAGCA    634
                     |||..||||.||.|||||||||.|||||||.|||||.||||||||..|.|
RBAM_027030__    597 TTTATTGTATCATTACGTCGAAGAGCCAGCGTGGGACAGCTGGCTTGGGA    646

BSNT_04362___    635 TGTACGGCATAGAGCTGACAGAAAGCCTTCGGTTGCGAATGGCTTGGTAT    684
                     ||||||||||..||||.||.|||.|.||||||.||.|.|||||.|||||.
RBAM_027030__    647 TGTACGGCATGAAGCTCACGGAAGGGCTTCGGCTGAGGATGGCGTGGTAC    696

BSNT_04362___    685 GTGTTATCTGAAACAATTACTTTCATTGCCTGGCATAAAGCAAAAGGCAA    734
                     .|||||||.||.||.||.||.|||||.||||||||.|||.|||||||.||
RBAM_027030__    697 ATGTTATCGGAGACCATCACCTTCATCGCCTGGCACAAATCAAAAGGAAA    746

BSNT_04362___    735 TGATAAGGAATTTCATGATGCAATGGAAGAGCTGCATATCCTCATGAAAC    784
                     .||.||.|..|.|||||||||.|||||||||||.|||..|||.|||||.|
RBAM_027030__    747 CGACAAAGCGTATCATGATGCCATGGAAGAGCTTCATGCCCTGATGAAGC    796

BSNT_04362___    785 GAATTGTTGATTAA    798
                     |.|||||..|.||.
RBAM_027030__    797 GGATTGTCAAGTAG    810


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04362 and RBAM_027030

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
