Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04355 and RBAM_027000

See Amino acid alignment / Visit BSNT_04355 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:49
# Commandline: needle
#    -asequence dna-align/BSNT_04355___ytnP.1.9828.seq
#    -bsequence dna-align/RBAM_027000___ytnP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04355___ytnP-RBAM_027000___ytnP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04355___ytnP-RBAM_027000___ytnP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04355___ytnP
# 2: RBAM_027000___ytnP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 876
# Identity:     628/876 (71.7%)
# Similarity:   628/876 (71.7%)
# Gaps:          69/876 ( 7.9%)
# Score: 2190.0
# 
#
#=======================================

BSNT_04355___      1 ATGGAAACAATGAAAATTGGAAACATCACGTTGACCTGGCTTGACGGAGG     50
                     |||||.|||.||||.|||||.||.||..|.||.||.|||||.|||||.||
RBAM_027000__      1 ATGGAGACATTGAATATTGGGAATATTTCATTAACATGGCTGGACGGCGG     50

BSNT_04355___     51 CGTGACGCATATGGACGGAGGCGCCATGTTCGGCGTTGTGCCAAAGCCGC    100
                     .||.||||||||||||||.||.||.||||||||||||||.||.||.||..
RBAM_027000__     51 TGTAACGCATATGGACGGCGGAGCGATGTTCGGCGTTGTTCCGAAACCTT    100

BSNT_04355___    101 TTTGGTCTAAAAAATATCCAGTCAATGAAAAAAACCAGATTGAACTAAGG    150
                     |.|||||.|.||||||.||.||.|||||.|||||||||||||||.||||.
RBAM_027000__    101 TATGGTCGAGAAAATACCCCGTAAATGATAAAAACCAGATTGAATTAAGA    150

BSNT_04355___    151 ACAGACCCTATTTTGATTCA-AAAGGATGGGCTCAATATCATCGTTGACG    199
                     ||||||||.|||.||| ||| |||..|.||.||.|||||..|.|||||||
RBAM_027000__    151 ACAGACCCGATTCTGA-TCAGAAAAAACGGCCTGAATATATTGGTTGACG    199

BSNT_04355___    200 CCGGAATTGGGTCC--GGCAAGCTGACTGATAAACAAAAACGAAACTATG    247
                     |.||.||.||  ||  ||.|||.|..||||||||||||||.|.||.||.|
RBAM_027000__    200 CGGGTATCGG--CCGAGGGAAGTTCTCTGATAAACAAAAAAGGAATTACG    247

BSNT_04355___    248 GCGTGACACAAGAGTCGAATGTGAAAC--CCTCATTAGCTGCACTCGGAT    295
                     ||||.|||||.||.||.|||.||||||  .||| ||.| ||..|||||  
RBAM_027000__    248 GCGTAACACAGGAATCCAATCTGAAACAATCTC-TTCG-TGACCTCGG--    293

BSNT_04355___    296 TAACGGTTGCC------GATATAGATGTGATCGCAATGACACACCTTCAT    339
                         |.||.||      ||.||..||.|...|||.|||||.||.||||||
RBAM_027000__    294 ----GCTTTCCTGTGAGGACATTCATATTGCCGCGATGACCCATCTTCAT    339

BSNT_04355___    340 TTTGATCATGCATGCGGTTTAACGGAATATGAAGGTGAACGGCTCGTCTC    389
                     |||||.|||||||||||..|.|||||.||....||.||...|||.|||||
RBAM_027000__    340 TTTGACCATGCATGCGGCCTGACGGAGTACAGCGGAGAGGAGCTTGTCTC    389

BSNT_04355___    390 TGTCTTTCCGAAT----GCAGTGATTTAT-ACATCAGCTGTTGAATGGGA    434
                     |||.||.||||||    |||     |||| ||.||.||....||.|||..
RBAM_027000__    390 TGTTTTCCCGAATGCCCGCA-----TTATCACTTCTGCAACAGAGTGGCG    434

BSNT_04355___    435 CGAAATGCGCCATCCGAATATCAGGTCGAAAAATACGTATTGGAAAGAAA    484
                     |||||||.|..|.||.||||||||.|||||||||||.|||||||.|||||
RBAM_027000__    435 CGAAATGAGAAACCCTAATATCAGATCGAAAAATACATATTGGAGAGAAA    484

BSNT_04355___    485 ATTGGGAGGCTGTAGCTGGCCAAGTCAAAACCTTTGAAGACACCTTAACG    534
                     ||||||||||.|||...|..||.|||.|||||||||||        ||||
RBAM_027000__    485 ATTGGGAGGCGGTACAAGATCAGGTCGAAACCTTTGAA--------AACG    526

BSNT_04355___    535 A--------TCACAGAGGGTATTACAATGCATCACACCGGAGGCCATAGC    576
                     |        |.|||||.||.|||||.|||||.||||||||.|||||.|||
RBAM_027000__    527 AGTATCAGCTGACAGAAGGCATTACGATGCACCACACCGGCGGCCACAGC    576

BSNT_04355___    577 GACGGACACAGTGTCCTGATATGCGAGGATGCGGGTGAAACTGCCGTACA    626
                     |||||.|||||.|||.|..|.|..||.||.|..||.||..|.||.||.||
RBAM_027000__    577 GACGGCCACAGCGTCATCGTCTTAGAAGACGGTGGGGAGGCGGCTGTGCA    626

BSNT_04355___    627 TATGGCAGATCTGATGCCGACACATGCCCACCGCAATCCGCTATGGGTGC    676
                     |.|.||.||.|||||||||||..|.||.||....||||||.|||||||||
RBAM_027000__    627 TTTTGCCGACCTGATGCCGACGAACGCGCATAAAAATCCGTTATGGGTGC    676

BSNT_04355___    677 TGGCTTACGATGATTATCCGATGACCTCTATCCCGCAAAAGCAGAAATGG    726
                     ||||.||.|||||||||||||||||||||||.||..||||||||||||||
RBAM_027000__    677 TGGCCTATGATGATTATCCGATGACCTCTATTCCAGAAAAGCAGAAATGG    726

BSNT_04355___    727 CAGGCGTTCGCAGCAGAAAAAGACG-CTGGTTTATTTTTTATCATGATGC    775
                     |||.|||||||.||||||||||||| ||||.|.|||||.|||||.||.| 
RBAM_027000__    727 CAGACGTTCGCGGCAGAAAAAGACGCCTGGCTCATTTTCTATCACGACG-    775

BSNT_04355___    776 CGA-ATATCGCGCGCTTCAATGGGATGAGGACG--GAA---GCATCAAAG    819
                     ||| .||..|.|||.|..||||||..||.||||  |||   ||..||   
RBAM_027000__    776 CGATTTACAGAGCGGTAAAATGGGGAGAAGACGGCGAAGTGGCTGCA---    822

BSNT_04355___    820 ATTCAGTCAAGCG--------AATGA    837
                       ||.|||||.||        |||.|
RBAM_027000__    823 --TCTGTCAAACGGGAGAAAAAATAA    846


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04355 and RBAM_027000

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
