Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04348 and RBAM_026960

See Amino acid alignment / Visit BSNT_04348 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:49
# Commandline: needle
#    -asequence dna-align/BSNT_04348___ytoQ.1.9828.seq
#    -bsequence dna-align/RBAM_026960___ytoQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04348___ytoQ-RBAM_026960___ytoQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04348___ytoQ-RBAM_026960___ytoQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04348___ytoQ
# 2: RBAM_026960___ytoQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 447
# Identity:     363/447 (81.2%)
# Similarity:   363/447 (81.2%)
# Gaps:           0/447 ( 0.0%)
# Score: 1479.0
# 
#
#=======================================

BSNT_04348___      1 ATGGAGTTTATCGTCTATTTAGCAGGAGAAATCCACAGCAATTGGCGCGA     50
                     |||.|||||.||||.||||||||.||.|||||||||||.||||||||.||
RBAM_026960__      1 ATGCAGTTTGTCGTGTATTTAGCGGGTGAAATCCACAGTAATTGGCGGGA     50

BSNT_04348___     51 GGAAATTAAAGAAAAAACAAAATCACTGAAGCTCCCGATTACGTTTGTTG    100
                     .||.||.|||.|||||.|||.|||.|||.|.||.||||||||||||||.|
RBAM_026960__     51 CGAGATCAAACAAAAAGCAACATCGCTGGACCTGCCGATTACGTTTGTCG    100

BSNT_04348___    101 GCCCGATGGAGAATCATGACCGCTCAGACAATATTGGTGAAGAAATTATG    150
                     ||||||||||.||.|||||.||||||||||||||.||.|||||.||||||
RBAM_026960__    101 GCCCGATGGAAAACCATGAACGCTCAGACAATATCGGAGAAGAGATTATG    150

BSNT_04348___    151 GGCGTACAGCCAAATGCCGTTTTAAAGGATGACAAAGCCTCTGACATCAA    200
                     |||||.|||||..||.|.||||||||.||.|.||.|||.|||||.|||||
RBAM_026960__    151 GGCGTGCAGCCCGATTCTGTTTTAAAAGACGCCAGAGCTTCTGATATCAA    200

BSNT_04348___    201 CAACTTCAGAACCGCCGTCCTGATGAATAAAGCAGACTTTGTGATCGCCC    250
                     |||.|||.|.||.|..||.||||||.|.|||||.||.|||||||||||||
RBAM_026960__    201 CAATTTCCGTACAGAGGTGCTGATGGAAAAAGCCGATTTTGTGATCGCCC    250

BSNT_04348___    251 TGTTTGGCGAAAAGTACAAACAGTGGAACACGGCAATGGATGCATCATAT    300
                     ||||||||||.||.||.||.||||||||.||.||.||||||||.||.|||
RBAM_026960__    251 TGTTTGGCGAGAAATATAAGCAGTGGAATACCGCGATGGATGCTTCTTAT    300

BSNT_04348___    301 GCGATCGCAAAAGGAAAACCCCTGATTATCATCCGGCCGGAATCGCTCCA    350
                     ||.||||||||||||||.||.||.|||.|||||||.|||.||...||.||
RBAM_026960__    301 GCCATCGCAAAAGGAAAGCCGCTCATTCTCATCCGTCCGAAAGAACTTCA    350

BSNT_04348___    351 CCATCCTTTAAAAGAGCTTTCCAATAAAGCGAATATTACGGTTGAAACCG    400
                     .|||||..|.||||||||||||...|||||||||||.|||||.|||||||
RBAM_026960__    351 TCATCCGCTGAAAGAGCTTTCCGGAAAAGCGAATATCACGGTCGAAACCG    400

BSNT_04348___    401 TTAACCAAGCCATTAAGGCCCTTTCCTATCTATTTGAAACAGAATAA    447
                     |.||.|||||.||.||.||.||.||.|||.|||||||||||||||||
RBAM_026960__    401 TCAATCAAGCGATGAAAGCACTCTCTTATTTATTTGAAACAGAATAA    447


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.