Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04345 and RBAM_026940

See Amino acid alignment / Visit BSNT_04345 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:48
# Commandline: needle
#    -asequence dna-align/BSNT_04345___ytpQ.1.9828.seq
#    -bsequence dna-align/RBAM_026940___ytpQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04345___ytpQ-RBAM_026940___ytpQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04345___ytpQ-RBAM_026940___ytpQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04345___ytpQ
# 2: RBAM_026940___ytpQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity:     662/814 (81.3%)
# Similarity:   662/814 (81.3%)
# Gaps:           8/814 ( 1.0%)
# Score: 2654.0
# 
#
#=======================================

BSNT_04345___      1 TTGAAAATGACCTCAAGGAAGCTGTCAGATATACTGAAGCAGCGCCTTCA     50
                     |||||||||||.||||||||||||.|.|||.||.|.||.||||||||.||
RBAM_026940__      1 TTGAAAATGACGTCAAGGAAGCTGGCGGATTTATTAAAACAGCGCCTGCA     50

BSNT_04345___     51 GCACGAGAATCGCTCCTTTCTGTTTGACAGAGAAAAAGACACCCTCCGTG    100
                     |||||||||.||.|||||..|.||||||||||||||||||||||||||||
RBAM_026940__     51 GCACGAGAACCGATCCTTCTTTTTTGACAGAGAAAAAGACACCCTCCGTG    100

BSNT_04345___    101 TTGAGGATCAAACGACTAAAAAAGGGATTACACTCGATTTGCCGCCGATT    150
                     ||||||||||||||||.||||||||.||.|||.|.||..|.||||||||.
RBAM_026940__    101 TTGAGGATCAAACGACCAAAAAAGGCATCACATTGGAGCTCCCGCCGATC    150

BSNT_04345___    151 ATTGCAAAATGGGA-ACTGAAAAAAGACGAAGCCATTGATGAGATCGTGT    199
                     |||||.||.||||| || |||||||||.|||||.||.||.||.|||||.|
RBAM_026940__    151 ATTGCGAAGTGGGAGAC-GAAAAAAGAAGAAGCGATCGACGAAATCGTCT    199

BSNT_04345___    200 ACTATGTCTCCGAAGCGATGACGGCAATGGAAGGGAAGGCTCAGGAAATG    249
                     |||||||.||.|||||.|||..|||.||||||||.|..|..|||||.|||
RBAM_026940__    200 ACTATGTGTCAGAAGCAATGGAGGCGATGGAAGGCAGCGGACAGGAGATG    249

BSNT_04345___    250 ACCGGGAAAGAAACTCGCATTTATCCGGTCATCCGCTCGACTTC-CTTCC    298
                     .||||.||.|||.|..|.||.||||||||||||||.||.||.|| .||||
RBAM_026940__    250 TCCGGAAAGGAAGCCGGAATCTATCCGGTCATCCGTTCCACATCATTTCC    299

BSNT_04345___    299 CGGACAAGTCCAGCGAAGATATCCCGCTCATTTATGACGATCATACCGCA    348
                     ||..||| .|.|||||.|..||.||||||.|.|||||.||.|||||.||.
RBAM_026940__    300 CGATCAA-ACGAGCGACGGCATTCCGCTCGTGTATGATGACCATACGGCC    348

BSNT_04345___    349 GAGACAAGAATTTATTACGCGCTAGATCTCGGGAAAACCTACCGTTTAAT    398
                     ||.||||||||.||.||||||||.||.|||||.||.||.|||||.|||||
RBAM_026940__    349 GAAACAAGAATCTACTACGCGCTTGACCTCGGCAAGACGTACCGCTTAAT    398

BSNT_04345___    399 TGACCAG-CGCATGCTTGAGAAAGAAAACTGGACAAAAGAGCGGATCAGA    447
                     ||| ||| ||.|||||.|||||||||||||||||||||||.||.|||||.
RBAM_026940__    399 TGA-CAGCCGGATGCTCGAGAAAGAAAACTGGACAAAAGAACGCATCAGG    447

BSNT_04345___    448 GAGACGGCCGCATTTAATCTCCGTTCCCTGCCGACGGTTGTCAAAGAGGA    497
                     ||||||||..||||.||||||||.||.||.||..|.|||||.|||.||||
RBAM_026940__    448 GAGACGGCGTCATTCAATCTCCGCTCTCTTCCTTCAGTTGTGAAACAGGA    497

BSNT_04345___    498 TACGGTTGCCGGCAATTACTTTTATTTCTTCAGGGCAAACGACGGATACG    547
                     |||||||||.|.||||||.||||||||.||||||||.||.|||||.||.|
RBAM_026940__    498 TACGGTTGCGGACAATTATTTTTATTTTTTCAGGGCGAATGACGGCTATG    547

BSNT_04345___    548 ATGCAAGCCGGATTTTGAACGAAGCGA-TCTTAAATGAGTATAAGCAGCA    596
                     |.||.|||||||||.|.||.||..||| |||| .||||.||.||||||..
RBAM_026940__    548 ACGCCAGCCGGATTCTCAATGATTCGATTCTT-CATGAATACAAGCAGGC    596

BSNT_04345___    597 TGCAGAAGGGGAGCTGGCGATCTCTGTTCCTCATCAGGACGTTTTGATTC    646
                     .||.|||||.||..|||||||.||.||.||.||||||||.||.||.||.|
RBAM_026940__    597 CGCTGAAGGCGAATTGGCGATTTCCGTCCCGCATCAGGATGTATTAATAC    646

BSNT_04345___    647 TTGCTGACATCCGGAATGAATCGGGGTATGATATTCTAGGACAAATGTCG    696
                     ||||||||||.||.|||||||||||.|||||||||.||||.||||||||.
RBAM_026940__    647 TTGCTGACATTCGAAATGAATCGGGTTATGATATTTTAGGGCAAATGTCC    696

BSNT_04345___    697 ATGAGCTTCTTTGCAGGCGGCACCGTCCCGATTACCGCCCTTTCATTTTT    746
                     |||||||||||||||.|||||||.||.||||||||.||||||||||||.|
RBAM_026940__    697 ATGAGCTTCTTTGCAAGCGGCACGGTGCCGATTACGGCCCTTTCATTTCT    746

BSNT_04345___    747 GTACAATGAAGGAAAGCTGGAACCGGTGTTTATCCTGGCGAAAAGCCGTC    796
                     |||.||||||||.|..||||||||.|||||||||.|||||||||||||.|
RBAM_026940__    747 GTATAATGAAGGCAGACTGGAACCTGTGTTTATCATGGCGAAAAGCCGGC    796

BSNT_04345___    797 CGAAAAAGGATTAG    810
                     ||||||||||||||
RBAM_026940__    797 CGAAAAAGGATTAG    810


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