Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04344 and RBAM_026930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:48
# Commandline: needle
# -asequence dna-align/BSNT_04344___ytpR.1.9828.seq
# -bsequence dna-align/RBAM_026930___ytpR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04344___ytpR-RBAM_026930___ytpR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04344___ytpR-RBAM_026930___ytpR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04344___ytpR
# 2: RBAM_026930___ytpR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 610
# Identity: 491/610 (80.5%)
# Similarity: 491/610 (80.5%)
# Gaps: 8/610 ( 1.3%)
# Score: 1940.5
#
#
#=======================================
BSNT_04344___ 1 ATGAACGCTTTTTATAATAAAGAAGGTGTGGGAGACACGCTCCTGATCTC 50
||||||||||||||.||||||||||||||||||||.|||||.||||||||
RBAM_026930__ 1 ATGAACGCTTTTTACAATAAAGAAGGTGTGGGAGATACGCTTCTGATCTC 50
BSNT_04344___ 51 TCTTCAAGATGTGACACGCGAACAATTAGGCTATGAAAAACACGGCGACG 100
||||.||||||.|.||||||||.||.|.||||||||||.|.|.|||||.|
RBAM_026930__ 51 TCTTAAAGATGCGGCACGCGAAGAAATCGGCTATGAAAGAGAAGGCGATG 100
BSNT_04344___ 101 TCGTCAAAATTTTCAATAACGAAACAAAAGAAACAACGGGCTTCAACATT 150
||||||.|||.||.||.||.||||||||||||||.||||||||.||||||
RBAM_026930__ 101 TCGTCAGAATCTTTAACAAAGAAACAAAAGAAACGACGGGCTTTAACATT 150
BSNT_04344___ 151 TTCAACGCGTCTTCTTA-CTTGAC-CATTGATGAAAACGGCCCTGTTGCG 198
||.||||.||||||||| || || .|||||.||.||||||||.||.||.
RBAM_026930__ 151 TTTAACGTGTCTTCTTATCT--ACAGATTGAGGACAACGGCCCCGTCGCT 198
BSNT_04344___ 199 CTCTCAGAAACATTCGTGCAAGATGTGAATGAGATTTTAAACAGAAACGG 248
.|.||.||.||||||||.||.|||||||||||.||..|.|||||||||||
RBAM_026930__ 199 TTGTCTGAGACATTCGTTCAGGATGTGAATGAAATACTGAACAGAAACGG 248
BSNT_04344___ 249 CGTTGAAGAAACATTAGTC-GTTGATTTATCTCCGAAGTTTGTTGTGGGG 297
||||..||||||..| |.| |||||..|.||||||||.||||||||.||.
RBAM_026930__ 249 CGTTTCAGAAACGCT-GACAGTTGACCTTTCTCCGAAATTTGTTGTCGGT 297
BSNT_04344___ 298 TATGTAGAATCAAAAGAAAAACATCCGAATGCGGATAAATTAAGCGTATG 347
.|.||.|||||.|||||||||||||||||||||||||||.|.|...|.||
RBAM_026930__ 298 CACGTTGAATCGAAAGAAAAACATCCGAATGCGGATAAACTGAATATCTG 347
BSNT_04344___ 348 TAAAGTCAACGTAGGAGAAGAAACGCTTCAGATCGTCTGCGGCGCGCCTA 397
..||||.||.||.|||||.|||||.||.||.|||||.|||||||||||.|
RBAM_026930__ 348 CCAAGTGAATGTGGGAGAGGAAACCCTCCAAATCGTTTGCGGCGCGCCGA 397
BSNT_04344___ 398 ACGTTGACCAAGGCCAAAAAGTTGTCGTTGCCAAAGTCGGTGCTGTGATG 447
||||.||..||||.||||||||.|||||.||.|||||||||||.||||||
RBAM_026930__ 398 ACGTGGATAAAGGGCAAAAAGTCGTCGTCGCTAAAGTCGGTGCGGTGATG 447
BSNT_04344___ 448 CCTAGCGGACTTGTCATTAAGGATGCAGAGCTTCGCGGCGTTCCGTCAAG 497
||.|||||||||||.|||||.||.||.||..|..|.||||||||||||||
RBAM_026930__ 448 CCGAGCGGACTTGTGATTAAAGACGCTGAATTAAGAGGCGTTCCGTCAAG 497
BSNT_04344___ 498 CGGGATGATCTGCTCAGCGAAAGAGCTTGATTTGCCGGATGCCCCTGCTG 547
|||.|||||||||||.||||||||.||.|.||||||||||||.||.||.|
RBAM_026930__ 498 CGGCATGATCTGCTCCGCGAAAGAACTCGCTTTGCCGGATGCGCCGGCGG 547
BSNT_04344___ 548 AAAAAGGAATCCTTGTGTTAGAAGGAGA-CTATGAGGCGGGAGACGCATT 596
|||||||.||.|||||..|.||| ||.| |...|||||.||.||.|||||
RBAM_026930__ 548 AAAAAGGGATTCTTGTTCTTGAA-GACAGCCGCGAGGCCGGCGAAGCATT 596
BSNT_04344___ 597 TCAGTTTTAG 606
|||.||.||.
RBAM_026930__ 597 TCAATTCTAA 606
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