Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04344 and RBAM_026930

See Amino acid alignment / Visit BSNT_04344 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:48
# Commandline: needle
#    -asequence dna-align/BSNT_04344___ytpR.1.9828.seq
#    -bsequence dna-align/RBAM_026930___ytpR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04344___ytpR-RBAM_026930___ytpR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04344___ytpR-RBAM_026930___ytpR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04344___ytpR
# 2: RBAM_026930___ytpR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 610
# Identity:     491/610 (80.5%)
# Similarity:   491/610 (80.5%)
# Gaps:           8/610 ( 1.3%)
# Score: 1940.5
# 
#
#=======================================

BSNT_04344___      1 ATGAACGCTTTTTATAATAAAGAAGGTGTGGGAGACACGCTCCTGATCTC     50
                     ||||||||||||||.||||||||||||||||||||.|||||.||||||||
RBAM_026930__      1 ATGAACGCTTTTTACAATAAAGAAGGTGTGGGAGATACGCTTCTGATCTC     50

BSNT_04344___     51 TCTTCAAGATGTGACACGCGAACAATTAGGCTATGAAAAACACGGCGACG    100
                     ||||.||||||.|.||||||||.||.|.||||||||||.|.|.|||||.|
RBAM_026930__     51 TCTTAAAGATGCGGCACGCGAAGAAATCGGCTATGAAAGAGAAGGCGATG    100

BSNT_04344___    101 TCGTCAAAATTTTCAATAACGAAACAAAAGAAACAACGGGCTTCAACATT    150
                     ||||||.|||.||.||.||.||||||||||||||.||||||||.||||||
RBAM_026930__    101 TCGTCAGAATCTTTAACAAAGAAACAAAAGAAACGACGGGCTTTAACATT    150

BSNT_04344___    151 TTCAACGCGTCTTCTTA-CTTGAC-CATTGATGAAAACGGCCCTGTTGCG    198
                     ||.||||.||||||||| ||  || .|||||.||.||||||||.||.||.
RBAM_026930__    151 TTTAACGTGTCTTCTTATCT--ACAGATTGAGGACAACGGCCCCGTCGCT    198

BSNT_04344___    199 CTCTCAGAAACATTCGTGCAAGATGTGAATGAGATTTTAAACAGAAACGG    248
                     .|.||.||.||||||||.||.|||||||||||.||..|.|||||||||||
RBAM_026930__    199 TTGTCTGAGACATTCGTTCAGGATGTGAATGAAATACTGAACAGAAACGG    248

BSNT_04344___    249 CGTTGAAGAAACATTAGTC-GTTGATTTATCTCCGAAGTTTGTTGTGGGG    297
                     ||||..||||||..| |.| |||||..|.||||||||.||||||||.||.
RBAM_026930__    249 CGTTTCAGAAACGCT-GACAGTTGACCTTTCTCCGAAATTTGTTGTCGGT    297

BSNT_04344___    298 TATGTAGAATCAAAAGAAAAACATCCGAATGCGGATAAATTAAGCGTATG    347
                     .|.||.|||||.|||||||||||||||||||||||||||.|.|...|.||
RBAM_026930__    298 CACGTTGAATCGAAAGAAAAACATCCGAATGCGGATAAACTGAATATCTG    347

BSNT_04344___    348 TAAAGTCAACGTAGGAGAAGAAACGCTTCAGATCGTCTGCGGCGCGCCTA    397
                     ..||||.||.||.|||||.|||||.||.||.|||||.|||||||||||.|
RBAM_026930__    348 CCAAGTGAATGTGGGAGAGGAAACCCTCCAAATCGTTTGCGGCGCGCCGA    397

BSNT_04344___    398 ACGTTGACCAAGGCCAAAAAGTTGTCGTTGCCAAAGTCGGTGCTGTGATG    447
                     ||||.||..||||.||||||||.|||||.||.|||||||||||.||||||
RBAM_026930__    398 ACGTGGATAAAGGGCAAAAAGTCGTCGTCGCTAAAGTCGGTGCGGTGATG    447

BSNT_04344___    448 CCTAGCGGACTTGTCATTAAGGATGCAGAGCTTCGCGGCGTTCCGTCAAG    497
                     ||.|||||||||||.|||||.||.||.||..|..|.||||||||||||||
RBAM_026930__    448 CCGAGCGGACTTGTGATTAAAGACGCTGAATTAAGAGGCGTTCCGTCAAG    497

BSNT_04344___    498 CGGGATGATCTGCTCAGCGAAAGAGCTTGATTTGCCGGATGCCCCTGCTG    547
                     |||.|||||||||||.||||||||.||.|.||||||||||||.||.||.|
RBAM_026930__    498 CGGCATGATCTGCTCCGCGAAAGAACTCGCTTTGCCGGATGCGCCGGCGG    547

BSNT_04344___    548 AAAAAGGAATCCTTGTGTTAGAAGGAGA-CTATGAGGCGGGAGACGCATT    596
                     |||||||.||.|||||..|.||| ||.| |...|||||.||.||.|||||
RBAM_026930__    548 AAAAAGGGATTCTTGTTCTTGAA-GACAGCCGCGAGGCCGGCGAAGCATT    596

BSNT_04344___    597 TCAGTTTTAG    606
                     |||.||.||.
RBAM_026930__    597 TCAATTCTAA    606


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