Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04335 and RBAM_026890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:48
# Commandline: needle
# -asequence dna-align/BSNT_04335___ytxH.1.9828.seq
# -bsequence dna-align/RBAM_026890___ytxH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04335___ytxH-RBAM_026890___ytxH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04335___ytxH-RBAM_026890___ytxH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04335___ytxH
# 2: RBAM_026890___ytxH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 472
# Identity: 335/472 (71.0%)
# Similarity: 335/472 (71.0%)
# Gaps: 71/472 (15.0%)
# Score: 1244.0
#
#
#=======================================
BSNT_04335___ 1 ATGATGAGCAAAGATGGAATTAATAGTAAAGATTTTTTAATCGGAACTTT 50
|||||||||||||||||.||||||||.|||||||||||||||||..|
RBAM_026890__ 1 ---ATGAGCAAAGATGGAATCAATAGTAAGGATTTTTTAATCGGAACGCT 47
BSNT_04335___ 51 AATCGGGGGAATCATCGGTGCCACTACAGCTCTTTTTCTAGCGCCTAAAT 100
.|||||||||||.|||||.||.||.||.||..|.|||||.||||||||||
RBAM_026890__ 48 GATCGGGGGAATTATCGGCGCGACAACGGCGTTGTTTCTGGCGCCTAAAT 97
BSNT_04335___ 101 CAGGCAAAGAACTTCGCGACGATCTCGGCAGCCAGGCTGTTGCTTTACGG 150
||||.||.||.||.|||||||||||||||||.||||||..|||.|||..|
RBAM_026890__ 98 CAGGTAAGGAGCTGCGCGACGATCTCGGCAGTCAGGCTTCTGCGTTAAAG 147
BSNT_04335___ 151 GACAAAACTGATAAAATGACGGCAGATGCGAAGGAAAAAGGCACGCAATA 200
||.||.||.||.|.|||||||||.||.|||||.|||||||||.|.|||||
RBAM_026890__ 148 GATAAGACGGACAGAATGACGGCCGACGCGAAAGAAAAAGGCTCTCAATA 197
BSNT_04335___ 201 TGTCAGCATCGCAAAAGACAAAACTTCCAACATCACACAGCTTGTAGCGG 250
||||||||||||.|||||||||||.||.||.|||||.|||||.|||||.|
RBAM_026890__ 198 TGTCAGCATCGCCAAAGACAAAACATCTAATATCACCCAGCTGGTAGCTG 247
BSNT_04335___ 251 ATCAGTCTGGGCAGATCATGAACAAGGTGAAGGATTTAAGAGACCGTTCT 300
|||||||.||.|||||.|||||.||.|||||||||||||.||||||||||
RBAM_026890__ 248 ATCAGTCAGGCCAGATTATGAATAAAGTGAAGGATTTAAAAGACCGTTCT 297
BSNT_04335___ 301 AAATCTGATAAAACGGATTCATCGACTGCAATGC--AAGATATGAGGGAA 348
|| ||..|.|| |.|.||| .||.|| ||||.|.| |
RBAM_026890__ 298 AA----GAGCACAC----TAACCGA---GAAAGCCGAAGAGACG-----A 331
BSNT_04335___ 349 GAAGCG--ATGCAGG---CGGCTGATGAAACAAAAG-ATCAAGTCCTCCA 392
|||||| ||||||| |||| |.|||| ||||||.||
RBAM_026890__ 332 GAAGCGAAATGCAGGACACGGC--------CCAAAGCATCAAGGCC---- 369
BSNT_04335___ 393 GACGAAAGAAGATGTAAAAGACGAACTGAAAGATGCAC-----AAAAACA 437
||||..| |||||| | |||||
RBAM_026890__ 370 -------GAAGCGG---AAGACG--------------CCGGGGAAAAA-- 393
BSNT_04335___ 438 GGCTGAGCAGTTGAATCGCTGA 459
||.|..|||...|||||||||
RBAM_026890__ 394 -GCCGGTCAGGCAAATCGCTGA 414
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