Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04335 and RBAM_026890

See Amino acid alignment / Visit BSNT_04335 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:48
# Commandline: needle
#    -asequence dna-align/BSNT_04335___ytxH.1.9828.seq
#    -bsequence dna-align/RBAM_026890___ytxH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04335___ytxH-RBAM_026890___ytxH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04335___ytxH-RBAM_026890___ytxH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04335___ytxH
# 2: RBAM_026890___ytxH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 472
# Identity:     335/472 (71.0%)
# Similarity:   335/472 (71.0%)
# Gaps:          71/472 (15.0%)
# Score: 1244.0
# 
#
#=======================================

BSNT_04335___      1 ATGATGAGCAAAGATGGAATTAATAGTAAAGATTTTTTAATCGGAACTTT     50
                        |||||||||||||||||.||||||||.|||||||||||||||||..|
RBAM_026890__      1 ---ATGAGCAAAGATGGAATCAATAGTAAGGATTTTTTAATCGGAACGCT     47

BSNT_04335___     51 AATCGGGGGAATCATCGGTGCCACTACAGCTCTTTTTCTAGCGCCTAAAT    100
                     .|||||||||||.|||||.||.||.||.||..|.|||||.||||||||||
RBAM_026890__     48 GATCGGGGGAATTATCGGCGCGACAACGGCGTTGTTTCTGGCGCCTAAAT     97

BSNT_04335___    101 CAGGCAAAGAACTTCGCGACGATCTCGGCAGCCAGGCTGTTGCTTTACGG    150
                     ||||.||.||.||.|||||||||||||||||.||||||..|||.|||..|
RBAM_026890__     98 CAGGTAAGGAGCTGCGCGACGATCTCGGCAGTCAGGCTTCTGCGTTAAAG    147

BSNT_04335___    151 GACAAAACTGATAAAATGACGGCAGATGCGAAGGAAAAAGGCACGCAATA    200
                     ||.||.||.||.|.|||||||||.||.|||||.|||||||||.|.|||||
RBAM_026890__    148 GATAAGACGGACAGAATGACGGCCGACGCGAAAGAAAAAGGCTCTCAATA    197

BSNT_04335___    201 TGTCAGCATCGCAAAAGACAAAACTTCCAACATCACACAGCTTGTAGCGG    250
                     ||||||||||||.|||||||||||.||.||.|||||.|||||.|||||.|
RBAM_026890__    198 TGTCAGCATCGCCAAAGACAAAACATCTAATATCACCCAGCTGGTAGCTG    247

BSNT_04335___    251 ATCAGTCTGGGCAGATCATGAACAAGGTGAAGGATTTAAGAGACCGTTCT    300
                     |||||||.||.|||||.|||||.||.|||||||||||||.||||||||||
RBAM_026890__    248 ATCAGTCAGGCCAGATTATGAATAAAGTGAAGGATTTAAAAGACCGTTCT    297

BSNT_04335___    301 AAATCTGATAAAACGGATTCATCGACTGCAATGC--AAGATATGAGGGAA    348
                     ||    ||..|.||    |.|.|||   .||.||  ||||.|.|     |
RBAM_026890__    298 AA----GAGCACAC----TAACCGA---GAAAGCCGAAGAGACG-----A    331

BSNT_04335___    349 GAAGCG--ATGCAGG---CGGCTGATGAAACAAAAG-ATCAAGTCCTCCA    392
                     ||||||  |||||||   ||||        |.|||| ||||||.||    
RBAM_026890__    332 GAAGCGAAATGCAGGACACGGC--------CCAAAGCATCAAGGCC----    369

BSNT_04335___    393 GACGAAAGAAGATGTAAAAGACGAACTGAAAGATGCAC-----AAAAACA    437
                            ||||..|   ||||||              |     |||||  
RBAM_026890__    370 -------GAAGCGG---AAGACG--------------CCGGGGAAAAA--    393

BSNT_04335___    438 GGCTGAGCAGTTGAATCGCTGA    459
                      ||.|..|||...|||||||||
RBAM_026890__    394 -GCCGGTCAGGCAAATCGCTGA    414


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