Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04333 and RBAM_026880

See Amino acid alignment / Visit BSNT_04333 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:48
# Commandline: needle
#    -asequence dna-align/BSNT_04333___ytxJ.1.9828.seq
#    -bsequence dna-align/RBAM_026880___ytxJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04333___ytxJ-RBAM_026880___ytxJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04333___ytxJ-RBAM_026880___ytxJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04333___ytxJ
# 2: RBAM_026880___ytxJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 340
# Identity:     193/340 (56.8%)
# Similarity:   193/340 (56.8%)
# Gaps:          98/340 (28.8%)
# Score: 647.5
# 
#
#=======================================

BSNT_04333___      1 ATGGCTAAACAGCTTAT-TCAATCTGAGGAAGAATTTAAACGGATTGC--     47
                     |||.|.||||||||.|| || .|||||.|||||.||.|||   |.|||  
RBAM_026880__      1 ATGACAAAACAGCTGATATC-GTCTGAAGAAGAGTTCAAA---AATGCCG     46

BSNT_04333___     48 -------AGAACAGGAAGGCGCTTTCGTCTTCTTTAAACACAGCACCACA     90
                            ||||    ||..|||  |.||.||.||.|||||||||||.||.
RBAM_026880__     47 CTGAGAAAGAA----AACACGC--TGGTGTTTTTGAAACACAGCACAACC     90

BSNT_04333___     91 TGCCCGATCAGCCAGGCAGCATTTCATGAGTTTGATGCCTTTGCAAATC-    139
                     ||||||||||||||.||.||.|||||.||||||||.||||||||  ||| 
RBAM_026880__     91 TGCCCGATCAGCCAAGCCGCGTTTCAGGAGTTTGACGCCTTTGC--ATCG    138

BSNT_04333___    140 -AGCATGAGGATGTGCCGGCTTACTATCTTCAAGTACAAGA-AGCCCGGC    187
                      |||||..|||.|||||..||||.||.||.||.||.||.|| || |||||
RBAM_026880__    139 GAGCATTCGGAAGTGCCTTCTTATTACCTGCAGGTGCAGGACAG-CCGGC    187

BSNT_04333___    188 CGCTGTCTAATTTCATTGCAGAAACATATGGGGTCAAGCATGAAAGCCCT    237
                     ||||.||.||.|..||.||.||.|||||.||.||.||.|||||||||||.
RBAM_026880__    188 CGCTTTCAAACTATATCGCCGAGACATACGGCGTGAAACATGAAAGCCCG    237

BSNT_04333___    238 CAGATATTCATCATCCAGAACGGTGAAGTGAAATGGCATACCTCACATTC    287
                     ||..|||||.||||        .|||                        
RBAM_026880__    238 CAAGTATTCGTCAT--------TTGA------------------------    255

BSNT_04333___    288 ACAAATTACAGAAGCCGCTATTGAGCAGCATTTGTCATAG    327
                                                             
RBAM_026880__    255 ----------------------------------------    255


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.