Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04330 and RBAM_026850

See Amino acid alignment / Visit BSNT_04330 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:48
# Commandline: needle
#    -asequence dna-align/BSNT_04330___motP.1.9828.seq
#    -bsequence dna-align/RBAM_026850___ytxD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04330___motP-RBAM_026850___ytxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04330___motP-RBAM_026850___ytxD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04330___motP
# 2: RBAM_026850___ytxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 859
# Identity:     639/859 (74.4%)
# Similarity:   639/859 (74.4%)
# Gaps:          59/859 ( 6.9%)
# Score: 2410.0
# 
#
#=======================================

BSNT_04330___      1 TTGCTTTTTTCATGGGGAGAAATGATGAAACGTTTTGATTATCTTACACC     50
                                             ||||||||||||||||||||.||.||
RBAM_026850__      1 ------------------------ATGAAACGTTTTGATTATCTGACGCC     26

BSNT_04330___     51 TGTTGGATTTGTGTTAGGAACGAT-TATTATTGT---TATCGGGATTATT     96
                     .|||||.|||.||||||    |.| |||||||||   .|||||.|||.|.
RBAM_026850__     27 CGTTGGCTTTATGTTAG----GCTGTATTATTGTCGCAATCGGTATTCTG     72

BSNT_04330___     97 TCAGGATCGGGAGTAAGC-GGTTTCCGCTCTTTTCTTGATCTGACCTCTT    145
                     |||||..|||||.| .|| ||..||.|.||.|||.|.||||||||.||||
RBAM_026850__     73 TCAGGGACGGGACT-GGCGGGAATCAGTTCATTTTTAGATCTGACTTCTT    121

BSNT_04330___    146 TCTTCATCGTAACAGGGGGACTT--TGCGCCGCTGTTTTTATCAGTTTTC    193
                     |.||.|||||.|||||.||.|||  ||||  ||..|.||||||||.||||
RBAM_026850__    122 TTTTAATCGTCACAGGCGGCCTTGCTGCG--GCGATCTTTATCAGCTTTC    169

BSNT_04330___    194 CGCCAAGTGAGCTGAAAAAAGCGCCCTCTGTGTTAAAGCAGGCATTCATC    243
                     ||||.||.||..|.||.|||.|.||.|||||..|.||.||||.||||..|
RBAM_026850__    170 CGCCGAGGGATTTAAAGAAAACCCCTTCTGTTCTGAAACAGGTATTCTCC    219

BSNT_04330___    244 CGCCAGGAAGACAATGTGAAAGATCTTGTGAAAACCTTTGTTTCCCTTTC    293
                     ||.|||||.||||||||||||||.|||||.|.|...|||||...||||||
RBAM_026850__    220 CGTCAGGATGACAATGTGAAAGAGCTTGTCAGAGTATTTGTCAGCCTTTC    269

BSNT_04330___    294 CGATCACGCGCGAAAACACGGGCTTTTATCATTGGATGATCAGGCTCGGG    343
                     .||.||.|||||.|..||.||||||.|.||..|||||||.|||||.||.|
RBAM_026850__    270 GGAGCAGGCGCGCAGGCAGGGGCTTCTGTCTCTGGATGACCAGGCGCGTG    319

BSNT_04330___    344 AAATCAAAGATCCATTCTTGAAAAAAGGGC---TGCTTTTAGCGATTGAC    390
                     |.|||||.|||||.||.||.||||||||||   |||||   |||||||||
RBAM_026850__    320 AGATCAAGGATCCGTTTTTAAAAAAAGGGCTTTTGCTT---GCGATTGAC    366

BSNT_04330___    391 GGCTGGGATGAAGAAACGATTCGGCTCGTCATGGATTCAGAAATCGCAGC    440
                     ||||||||.||.||||||||.|||||.||.||||||||.||.|||||.||
RBAM_026850__    367 GGCTGGGACGAGGAAACGATCCGGCTGGTGATGGATTCTGAGATCGCCGC    416

BSNT_04330___    441 AATGGAGGAACGGCACCGAAAAGGGCGGCGAGTTTTTGAAAAAGCGGGAG    490
                     .|||||.|||.|.|||.|||||||..|.||.||||||||||||||.||.|
RBAM_026850__    417 GATGGAAGAAAGACACAGAAAAGGTAGACGCGTTTTTGAAAAAGCCGGTG    466

BSNT_04330___    491 AATTCGCTCCGGCATGGGGAATGATCGGAACACTCGTCGGGCTTGTGCTG    540
                     |.|||||.||.||.||||||||||||||.||.||||||||.||.||.||.
RBAM_026850__    467 ATTTCGCACCCGCCTGGGGAATGATCGGGACGCTCGTCGGACTCGTTCTC    516

BSNT_04330___    541 ATGCTCAAAAACTTAAACGACCCGCATATGCTCGGACCAAACATGGCCAT    590
                     |||||||||||||||||.||||||||||..||||||||.||||||||..|
RBAM_026850__    517 ATGCTCAAAAACTTAAATGACCCGCATACCCTCGGACCGAACATGGCTGT    566

BSNT_04330___    591 TGCGCTTCTGACGACTTTATATGGTTCATTACTGGCAAATATGGTCTTCA    640
                     ||||||..|||||||..|.||.||..|..|.||.||.||..||||.||.|
RBAM_026850__    567 TGCGCTATTGACGACGCTGTACGGAGCGCTGCTTGCCAACTTGGTGTTTA    616

BSNT_04330___    641 ACCCGATCGCGGCTAAGCTTGAAGAGAAAACAGAAAGTGAAATTTTCATC    690
                     .|||.||||||||.|||||||||||.|||||.||||||||||||||||||
RBAM_026850__    617 TCCCAATCGCGGCAAAGCTTGAAGAAAAAACGGAAAGTGAAATTTTCATC    666

BSNT_04330___    691 AAGCAGGTAATGGTGGAAGGGATTATCGGTGTTCAATCCGGAAAAAACCC    740
                     ||.|||||.|||.|.||||||.||.||||..|.|||||.||.|||||.||
RBAM_026850__    667 AAACAGGTCATGATCGAAGGGGTTGTCGGCATCCAATCGGGCAAAAATCC    716

BSNT_04330___    741 GCGCAACCTTGAAAGCCAGCTGGTCGTTTTCAGCTCACGGGAAGAATGGC    790
                     .||||||||.|||||.|||||.|||||.|||||||||.|.|||||.||||
RBAM_026850__    717 CCGCAACCTCGAAAGTCAGCTCGTCGTCTTCAGCTCAAGAGAAGACTGGC    766

BSNT_04330___    791 ----AGAAGCAGCC--AAAACAAGTAAAAACAAAAAAGGGATCTGTACAT    834
                         ||.| |||||  ..|.||||        ||||||||..||||.|||
RBAM_026850__    767 GTAAAGGA-CAGCCTGCGAGCAAG--------AAAAAGGGCGCTGTCCAT    807

BSNT_04330___    835 GAAGCTTAG    843
                     |||||||||
RBAM_026850__    808 GAAGCTTAG    816


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04330 and RBAM_026850

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
