Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03927 and RBAM_026760
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_03927___yrhO.1.9828.seq
# -bsequence dna-align/RBAM_026760.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03927___yrhO-RBAM_026760.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03927___yrhO-RBAM_026760.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03927___yrhO
# 2: RBAM_026760
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 993
# Identity: 484/993 (48.7%)
# Similarity: 484/993 (48.7%)
# Gaps: 351/993 (35.3%)
# Score: 963.0
#
#
#=======================================
BSNT_03927___ 1 ------------ATGAAAGAAAATATGTT--AGACATTTTAAAAAACCTC 36
.|||||||| || |||.||||..|
RBAM_026760 1 ATGGAGGATGTTCTGAAAGAA------TTACAGAAATTTGGA-------- 36
BSNT_03927___ 37 AATTTTACAGAATATGAATCGAAAGCGTAT-TTGGCATTATTGCAAGAAT 85
|||.|..|||||||||..|||||.||| |.||| ||.|||.||.|.|
RBAM_026760 37 ---TTTTCTCAATATGAATGTAAAGCATATATCGGC-TTGTTGAAACACT 82
BSNT_03927___ 86 CACCTTTAACAGGCTATG----CCGTTGCCAAAAAATCCGGAGTTCCCCG 131
|.|||.|.||.||.|||| |.| |||||..||.||.||||||||
RBAM_026760 83 CGCCTGTTACCGGATATGAAATCAG----CAAAAGGTCAGGCGTTCCCCG 128
BSNT_03927___ 132 TTCTAAAATTTATGAAGTCTT--GGAAAGCCTTG--TGTTAAGGGGAGAT 177
.||.|..||.|||||.||.|| ||||| ||| ||.||| .||.|.|
RBAM_026760 129 CTCAATGATCTATGAGGTATTGGGGAAA---TTGGTTGATAA-AGGCGCT 174
BSNT_03927___ 178 GT---TTTTGTCAGTCATGGAAATACGCCTCAGTATGTTCCTGT------ 218
|| |.|||| ||| ||.||.|||.||
RBAM_026760 175 GTCCATATTGT---------------GCC---GTCTGATCCGGTTACATA 206
BSNT_03927___ 219 --CCCCGC-------AAAAGAACTGATTAAAAACCG-CCGGCTCAAAGCG 258
|||||| |||.|||.| ||.|| ||||||| ||
RBAM_026760 207 TGCCCCGCTGGCCGGAAAGGAATT-------AATCGACCGGCTC----CG 245
BSNT_03927___ 259 G-AAGAGCATTTTGA----TCA---GGC-----TGAGAAATATTT----- 290
| |.| ||||.|| ||| ||| ||||.||.|.||
RBAM_026760 246 GCATG---ATTTCGAGAGTTCATTCGGCTACCTTGAGGAAAAGTTATTGG 292
BSNT_03927___ 291 ---TGAAAAGTTCGAGCAGACTGCTAATGACCGGGAAAACATCTGGAATA 337
||.|||| |||||| |||.| .||||.
RBAM_026760 293 CGCTGGAAAG--CGAGCA---------------GGAGA------TGAATG 319
BSNT_03927___ 338 TCACCGGCCGCAGTGA-----AAT--TCTTG------AAAAGGTGAAGGC 374
|||.|.|||||| |.| ||| ||.|| |..||.||||||
RBAM_026760 320 TCATCCGCCGCA-TCAGCACGAATGATCATGTCATCAATGAGATGAAGG- 367
BSNT_03927___ 375 TTGTATTTTATCTGCCAAAAAAAGAATCCTCTTAGAAATATGGAAAGAGG 424
||.|.|| || |||||| || || |.|||||
RBAM_026760 368 ----ATATGAT-TG----AAAAAG---CC-----GA------GGAAGAG- 393
BSNT_03927___ 425 ATTTTG-----------------AGGAGAT------------AGAAGCAG 445
||.|| ||.|||| ||||||
RBAM_026760 394 -TTGTGGCTGTCTGTCTGGGAACAGCAGATTCCCTTTATTCAAGAAGC-- 440
BSNT_03927___ 446 AGCT--CAAACAGGCGGCAGAACAA--GGCGTTATTGTCACCATTATTGC 491
.||| |||||..||.||.|||||| |.|..|.||.|| .||||.
RBAM_026760 441 CGCTAACAAACGCGCCGCCGAACAATTGCCCGTCTTTTC-----GATTGT 485
BSNT_03927___ 492 GTACGG---------AG---ACATCGTATCTGATTTTGCCAATGTTTACC 529
||.||| || |..|||.| |.|..|.|||
RBAM_026760 486 GTTCGGCCCTCCGGAAGTGAAGCTCGGA----AATACGACAA-------- 523
BSNT_03927___ 530 TTCATGATATGAGCAGTGAAATTAC--AGAAGAGTATGACGGA----CGG 573
.||||.|||||.....||||.|..| |||| ||||| |||
RBAM_026760 524 ATCATAATATGTCTCCTGAAGTGGCGGAGAA-------ACGGATGGGCGG 566
BSNT_03927___ 574 TGGCTTGTCTATAG----CGGAGATGATTCAGAAGTCGTAGCGGGCA--T 617
..|.||..|.|||| |.|.|||.||..|||||||.||...|.|| |
RBAM_026760 567 AAGATTAACGATAGCTGCCCGCGATAATAAAGAAGTCTTAATCGCCAATT 616
BSNT_03927___ 618 TGTCTCACTTGGCA-ACGACAGCC-GTGCTGCAT------GGACGATGCA 659
|.|||| .||| ||||..||| |.|| ||| .||.|||.|
RBAM_026760 617 TTTCTC----CGCAGACGAATGCCTGGGC--CATTAAATCAGAAGATCC- 659
BSNT_03927___ 660 TGTAGGTTTAG---TCATGCCTATTACTGAAGTGATCATTCATGATCTGT 706
.|.|.|.| ||.||.|||| .|||...||.|..||.||||||.
RBAM_026760 660 ---CGCTCTCGTTCTCGTGGCTAT---GGAATATATGAGGCACGATCTGA 703
BSNT_03927___ 707 ACCTCATGGAAATTCTGAAAAA-------GCATAGAGAGCTTTTAGAAGA 749
...||..|||..||.|||||.| ||..|||.|| |.||||
RBAM_026760 704 TGTTCGCGGAGCTTGTGAAAGAAGTCGGGGCTGAGAAAG----TTGAAG- 748
BSNT_03927___ 750 GAGCTTCGGGAAA-------------AATCTCATCCAGTTG-CGCCGTAA 785
||.|...|||| .||.|||| ||.| |.|||.||
RBAM_026760 749 --GCCTGATGAAACAAAACCATTCGTTATTTCAT---GTCGTCACCGGAA 793
BSNT_03927___ 786 ATTTTCTATCCATTCAGATTTCAAAAAACATTATTTGGAATAA 828
|||..||||.|| ||
RBAM_026760 794 -------ATCGGTTCATAT---AA------------------- 807
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