Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05812 and RBAM_026600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:19
# Commandline: needle
# -asequence dna-align/BSNT_05812___ywdH.1.9828.seq
# -bsequence dna-align/RBAM_026600___ywdH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05812___ywdH-RBAM_026600___ywdH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05812___ywdH-RBAM_026600___ywdH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05812___ywdH
# 2: RBAM_026600___ywdH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1371
# Identity: 1255/1371 (91.5%)
# Similarity: 1255/1371 (91.5%)
# Gaps: 0/1371 ( 0.0%)
# Score: 5811.0
#
#
#=======================================
BSNT_05812___ 1 ATGAACAGCATCCCCTCTATCATCAGCAAGCATAAAGCCTATTTTGCGGC 50
|||||||||||.|||||||||.||||||||||.|||||||||||||||||
RBAM_026600__ 1 ATGAACAGCATTCCCTCTATCGTCAGCAAGCACAAAGCCTATTTTGCGGC 50
BSNT_05812___ 51 GGGACATACGAGACCGCTTGAATCGAGACTGAACATTTTGCGAAAGCTGA 100
|||.||||||||||.|||.|||||||||||||||||..|||.||||||||
RBAM_026600__ 51 GGGGCATACGAGACAGCTAGAATCGAGACTGAACATGCTGCAAAAGCTGA 100
BSNT_05812___ 101 AACAAGCCGTCAGAACTCATGAAGCCGATCTCATAGCCGCTCTCTACCAG 150
||||||||.|||.|||.||.|||||||||.|.|.||||||||||||||||
RBAM_026600__ 101 AACAAGCCATCAAAACACAAGAAGCCGATATAACAGCCGCTCTCTACCAG 150
BSNT_05812___ 151 GATCTCCACAAATCCGAGCAAGAAGCATACTCAACAGAAATCGGAATCGT 200
|||||||||||||||||.||.||..|.|||.|.||||||||||||||.||
RBAM_026600__ 151 GATCTCCACAAATCCGAACAGGAGTCGTACACGACAGAAATCGGAATTGT 200
BSNT_05812___ 201 CTTGGAGGAAATCAGCTTTGTCATGAAACGGCTGAGAAAATGGTCCAAGC 250
..|||||||||||||.|||||.|||||.||||||.||||||||..|||.|
RBAM_026600__ 201 ACTGGAGGAAATCAGTTTTGTGATGAAGCGGCTGGGAAAATGGGTCAAAC 250
BSNT_05812___ 251 CGAAACGAGTCAAAACGCCGCTGACTCATCTAGGCTCCAAAAGCATCATC 300
|||||||||||||||||||.||||||||.||||||||.|||||||||||.
RBAM_026600__ 251 CGAAACGAGTCAAAACGCCTCTGACTCACCTAGGCTCGAAAAGCATCATT 300
BSNT_05812___ 301 ATTCCTGAGCCGTATGGAACCGTTTTGGTGATTGCACCTTGGAACTATCC 350
||.||||||||.|||||||||||||||||||||||.||||||||.|||||
RBAM_026600__ 301 ATCCCTGAGCCATATGGAACCGTTTTGGTGATTGCGCCTTGGAATTATCC 350
BSNT_05812___ 351 CTTGCAGCTGGCGCTTTCTCCGTTGATTGGAGCCATTGCGGCGGGGAACA 400
||||||.||||||||||||||||||||||||||||||||.||||||||||
RBAM_026600__ 351 CTTGCAACTGGCGCTTTCTCCGTTGATTGGAGCCATTGCAGCGGGGAACA 400
BSNT_05812___ 401 CGGTCGTTCTCAAGCCATCAGAATATACGCCGGCTGTTTCTGCTATTCTT 450
|||||||||||||.||.|||||||||||||||||.|||||.|||.|||||
RBAM_026600__ 401 CGGTCGTTCTCAAACCGTCAGAATATACGCCGGCGGTTTCCGCTGTTCTT 450
BSNT_05812___ 451 TCCAAACTCATCAGCAGCGTTTTTCCTACTGATTATGTCGCTATGGCAGA 500
||||||||||||||||||||||||||||.|||.||||||||||||||.||
RBAM_026600__ 451 TCCAAACTCATCAGCAGCGTTTTTCCTAGTGACTATGTCGCTATGGCGGA 500
BSNT_05812___ 501 AGGCGGGCCCGATGTCAGCACAGCATTATTACAGCAGCCCTTTGACTACA 550
.||||||||||||||||||||.|..|||||||||||||||||||||||.|
RBAM_026600__ 501 GGGCGGGCCCGATGTCAGCACTGTGTTATTACAGCAGCCCTTTGACTATA 550
BSNT_05812___ 551 TTTTCTTTACAGGCAGTGTAGCTGTAGGAAAAATCGTCATGGAGGCCGCC 600
|||||||.|||||.||.||.||.||.||||||||||||||||||||||||
RBAM_026600__ 551 TTTTCTTCACAGGAAGCGTTGCCGTTGGAAAAATCGTCATGGAGGCCGCC 600
BSNT_05812___ 601 GCCAAACAATTAATTCCCGTAACCTTGGAGCTCGGCGGCAAAAGCCCCTG 650
||||||||||||||||||||.|||||||||||||||||||||||.|||||
RBAM_026600__ 601 GCCAAACAATTAATTCCCGTTACCTTGGAGCTCGGCGGCAAAAGTCCCTG 650
BSNT_05812___ 651 CATCGTCCATAAAGATGCTGACATTCAGCTTGCCGCCAAACGCATCGTCT 700
|||.||||||||.||||||||.||.|||||||||||||||||||||||||
RBAM_026600__ 651 CATTGTCCATAAGGATGCTGATATACAGCTTGCCGCCAAACGCATCGTCT 700
BSNT_05812___ 701 TCGGGAAATTTACAAATGCGGGACAAACCTGCATCGCACCGGATTATTTA 750
|||||||||||||||||||.||.|||||||||||||||||||||||||||
RBAM_026600__ 701 TCGGGAAATTTACAAATGCAGGGCAAACCTGCATCGCACCGGATTATTTA 750
BSNT_05812___ 751 TTTGTCCACGAGGACATCAAAACGAAGCTGGCAGAAGAAATGAAGCGTGC 800
|||||||||.|.||.||||||||||||||..|||||||||||||||||||
RBAM_026600__ 751 TTTGTCCACCAAGATATCAAAACGAAGCTCACAGAAGAAATGAAGCGTGC 800
BSNT_05812___ 801 GATCAGAGAATTTTACGGCCCTCAGCCGGAACGGAATCCACAGTACGGCA 850
||||||.||||||||||||||||||||.||||..|||||.||||||||||
RBAM_026600__ 801 GATCAGTGAATTTTACGGCCCTCAGCCTGAACAAAATCCGCAGTACGGCA 850
BSNT_05812___ 851 AAATCGTCAGTGAGCGCCACTATCAGCGGCTGCTCAGCTTTCTGAATGAT 900
|||||||||||||.||||||||||||||||||||||||||||||||||||
RBAM_026600__ 851 AAATCGTCAGTGAACGCCACTATCAGCGGCTGCTCAGCTTTCTGAATGAT 900
BSNT_05812___ 901 GGCATCCCGCTCACAGGCGGACAATCTGATCCTGATCACCACAAAATTGC 950
|||||||||||||||||||||||||.|.|||||||||||||||||||.||
RBAM_026600__ 901 GGCATCCCGCTCACAGGCGGACAATTTAATCCTGATCACCACAAAATAGC 950
BSNT_05812___ 951 GCCGACCATTCTCGAACAAGTGAGAGATGACTCTCCAGTGATGCAGGAGG 1000
||||||.|||||.||.|||||||..|||||||||||||||||||||||||
RBAM_026600__ 951 GCCGACGATTCTAGATCAAGTGAAGGATGACTCTCCAGTGATGCAGGAGG 1000
BSNT_05812___ 1001 AAATTTTCGGGCCGATTCTTCCGCTCTTTACATACCGCGATATCGGGGAA 1050
|.|||||||||||.|||||||||||.|||||||||.|||||||||..|||
RBAM_026600__ 1001 AGATTTTCGGGCCAATTCTTCCGCTGTTTACATACGGCGATATCGATGAA 1050
BSNT_05812___ 1051 GTCATTGAAAAAGTCCAATCGCGCCCTAAGCCGCTCGCCCTGTATCTCTT 1100
|||||.||.|||||||||||.|||||.|||||||||||||||||||||||
RBAM_026600__ 1051 GTCATCGAGAAAGTCCAATCACGCCCAAAGCCGCTCGCCCTGTATCTCTT 1100
BSNT_05812___ 1101 CACCACAAACAAAGAAACTGAGCGCGCTGTTTTAGGAAATCTGTCGTTTG 1150
|||||||||||||||||||||||||||||||||||..||.||||||||||
RBAM_026600__ 1101 CACCACAAACAAAGAAACTGAGCGCGCTGTTTTAGAGAACCTGTCGTTTG 1150
BSNT_05812___ 1151 GCGGGGGCTGTGTCAATGATACGTTAATGCATGTTGCGACGCCGTATTTG 1200
||||.||||||||||||||||||||||||||.||.|||||.|||||||||
RBAM_026600__ 1151 GCGGCGGCTGTGTCAATGATACGTTAATGCACGTCGCGACACCGTATTTG 1200
BSNT_05812___ 1201 CCATTCGGCGGCGTCGGGGAAAGCGGCATCGGCAGCTATCACGGGTTTGA 1250
||||||||||||||||||||||||||||||||||||||||||||.|||||
RBAM_026600__ 1201 CCATTCGGCGGCGTCGGGGAAAGCGGCATCGGCAGCTATCACGGATTTGA 1250
BSNT_05812___ 1251 CAGTTTTAACACATTCACGCACAAAAAAAGCGTCGTCAAACAAACGAACC 1300
|||.||||||||.||.||||||||||||||||||||||||||||||||||
RBAM_026600__ 1251 CAGCTTTAACACGTTTACGCACAAAAAAAGCGTCGTCAAACAAACGAACC 1300
BSNT_05812___ 1301 GTTTCGACTTCGCATTTCGTTATCCTTCCTCCAAAAACGGGCTGCGAATG 1350
|.|||||||||||.||.|||||||||||.|||||||||||||||||||||
RBAM_026600__ 1301 GCTTCGACTTCGCTTTCCGTTATCCTTCTTCCAAAAACGGGCTGCGAATG 1350
BSNT_05812___ 1351 ATTCGAAAAATACTCAAATAA 1371
|||||.||||||||.||||||
RBAM_026600__ 1351 ATTCGGAAAATACTTAAATAA 1371
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